Classes
class	Distribution

class	DistributionMethods

class	ObsFrameConstructor

class	ObsFrameRead

class	ObsFrameWrite

class	ObsIoConstructor

class	ObsIoRead

class	ObsIoWrite

class	DescendingSort

class	ExtendedObsSpace

class	ConversionTestParameters

class	FormatDeterminationParameters

class	FileFormat

class	ObsDataVecTestFixture

class	ObsDataVector

class	MyParameters

class	ObsDtype

class	ObsSpaceTestFixture

class	ObsSpace

class	ObsSpaceIndexRecnum

class	ObsSpaceInvalidNumeric

class	ObsSpacePutDbChannels

class	ObsVecTestFixture

class	ObsVector

class	ObsVectorPackEigen

Functions
	CASE ("Derived variable, unit conversion, and exception checking methods")

	CASE ("Generate variants")

	CASE ("Concatenation mapping file; error checks of unit conversion methods")

	CASE ("Input data name matches the export data name")

	CASE ("Vertical coordinate mapping file")

	CASE ("Missing YAML on generate")

	CASE ("Non-empty inputs of equal element counts")

	CASE ("Empty inputs of equal element counts")

	CASE ("Unequal element counts")

	CASE ("One vector input")

	CASE ("Trailing spaces removed")

	CASE ("All space vectors")

	CASE ("input: empty")

	CASE ("input: ioda-v1 variable name")

	CASE ("input: ioda-v2 variable name")

	CASE ("input: variable name without group")

	CASE ("Convert variables")

	CASE ("Stitch variables, remove originals defaulted as true")

	CASE ("Stitch variables, remove originals set to false")

void	testConstructor ()

void	testDistribution (const eckit::Configuration &config, const eckit::Configuration &MyRankConfig, const ioda::Distribution *TestDist, const std::vector< std::size_t > &Index, const std::vector< std::size_t > &Recnums)

void	testDistributionConstructedManually ()

void	testDistributionConstructedByObsSpace ()

template<typename T >
void	testAccumulateScalar (const Distribution &TestDist, const std::vector< size_t > &myRecords, size_t expectedSum)

template<typename T >
void	testAccumulateVector (const Distribution &TestDist, const std::vector< size_t > &myRecords, size_t expectedSum)

template<typename T >
void	testMaxScalar (const Distribution &TestDist, const std::vector< size_t > &myRecords, size_t expectedMax)

template<typename T >
void	testMaxVector (const Distribution &TestDist, const std::vector< size_t > &myRecords, size_t expectedMax)

template<typename T >
void	testMinScalar (const Distribution &TestDist, const std::vector< size_t > &myRecords, size_t expectedMin)

template<typename T >
void	testMinVector (const Distribution &TestDist, const std::vector< size_t > &myRecords, size_t expectedMin)

void	testDistributionMethods ()

void	testFrameRead (ObsFrameRead &obsFrame, eckit::LocalConfiguration &obsConfig, ioda::ObsSpaceParameters &obsParams)

void	testRead ()

ObsGroup	buildTestObsGroup (const std::vector< eckit::LocalConfiguration > &dimConfigs, const std::vector< eckit::LocalConfiguration > &varConfigs)

void	frameWrite (ObsFrameWrite &obsFrame, eckit::LocalConfiguration &testConfig, const Has_Variables &sourceVars, const VarNameObjectList &varList, const VarNameObjectList &dimVarList, const VarDimMap &varDimMap, const Dimensions_t maxVarSize)

void	testWrite ()

void	testDescendingSort (const eckit::LocalConfiguration &conf)

void	testExtendedObsSpace (const eckit::LocalConfiguration &conf)

	CASE ("ioda/FileFormat")

	CASE ("ioda/determineFileFormat")

std::string	trim (const std::string &str)

template<typename T >
void	testPrint (const std::string &datatype)

	CASE ("ioda/ObsDataVector/printFloat")

	CASE ("ioda/ObsDataVector/printDouble")

	CASE ("ioda/ObsDataVector/printInt")

	CASE ("ioda/ObsDataVector/printString")

	CASE ("ioda/ObsDataVector/printDateTime")

	CASE ("ioda/ObsDataVector/closeObsSpace")

	CASE ("ioda/ObsDtype")

void	testGetDb ()

void	testPutDb ()

void	testPutGetChanSelect ()

void	testWriteableGroup ()

void	testMultiDimTransfer ()

void	testObsVariables ()

void	testDerivedObsError ()

void	testCleanup ()

void	testIndexRecnum ()

void	testInvalidNumeric ()

	CASE ("ioda/ObsSpace/testPutDb")

void	testCopyConstructor ()

void	testNotZero ()

void	testSave ()

void	testAxpy ()
	tests ObsVector::axpy methods More...

void	testDotProduct ()
	tests ObsVector::dot_product methods More...

void	testDistributedMath ()

void	testPackEigen ()
	tests ObsVector::packEigen, packEigenSize methods and mask methods More...

Variables
const int	locations = 40

const int	channels = 30

Function Documentation

◆ buildTestObsGroup()

ObsGroup ioda::test::buildTestObsGroup	(	const std::vector< eckit::LocalConfiguration > &	dimConfigs,
		const std::vector< eckit::LocalConfiguration > &	varConfigs
	)

Definition at line 48 of file test/io/ObsFrameWrite.h.

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◆ CASE() [1/29]

ioda::test::CASE ( "All space vectors" )

Definition at line 77 of file test-concatstringvecs.cpp.

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◆ CASE() [2/29]

ioda::test::CASE ( "Concatenation mapping file; error checks of unit conversion methods" )

Definition at line 26 of file test-layoutodb.cpp.

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◆ CASE() [3/29]

ioda::test::CASE ( "Convert variables" )

Definition at line 28 of file test_convertvariableunits.cpp.

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◆ CASE() [4/29]

ioda::test::CASE	(	"Derived	variable,
		unit	conversion,
		and exception checking methods"
	)

Definition at line 25 of file test-layoutobsgroup.cpp.

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◆ CASE() [5/29]

ioda::test::CASE ( "Empty inputs of equal element counts" )

Definition at line 33 of file test-concatstringvecs.cpp.

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◆ CASE() [6/29]

ioda::test::CASE ( "Generate variants" )

Definition at line 40 of file test-layoutobsgroup.cpp.

◆ CASE() [7/29]

ioda::test::CASE ( "Input data name matches the export data name" )

Definition at line 71 of file test-layoutodb.cpp.

◆ CASE() [8/29]

ioda::test::CASE ( "input: empty" )

Definition at line 21 of file test-convertv1pathtov2path.cpp.

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◆ CASE() [9/29]

ioda::test::CASE ( "input: ioda-v1 variable name" )

Definition at line 27 of file test-convertv1pathtov2path.cpp.

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◆ CASE() [10/29]

ioda::test::CASE ( "input: ioda-v2 variable name" )

Definition at line 33 of file test-convertv1pathtov2path.cpp.

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◆ CASE() [11/29]

ioda::test::CASE ( "input: variable name without group" )

Definition at line 40 of file test-convertv1pathtov2path.cpp.

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◆ CASE() [12/29]

ioda::test::CASE ( "ioda/determineFileFormat" )

Definition at line 68 of file test/ioda/FileFormat.h.

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◆ CASE() [13/29]

ioda::test::CASE ( "ioda/FileFormat" )

Definition at line 44 of file test/ioda/FileFormat.h.

◆ CASE() [14/29]

ioda::test::CASE ( "ioda/ObsDataVector/closeObsSpace" )

Definition at line 103 of file test/ioda/ObsDataVector.h.

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◆ CASE() [15/29]

ioda::test::CASE ( "ioda/ObsDataVector/printDateTime" )

Definition at line 99 of file test/ioda/ObsDataVector.h.

◆ CASE() [16/29]

ioda::test::CASE ( "ioda/ObsDataVector/printDouble" )

Definition at line 87 of file test/ioda/ObsDataVector.h.

◆ CASE() [17/29]

ioda::test::CASE ( "ioda/ObsDataVector/printFloat" )

Definition at line 83 of file test/ioda/ObsDataVector.h.

◆ CASE() [18/29]

ioda::test::CASE ( "ioda/ObsDataVector/printInt" )

Definition at line 91 of file test/ioda/ObsDataVector.h.

◆ CASE() [19/29]

ioda::test::CASE ( "ioda/ObsDataVector/printString" )

Definition at line 95 of file test/ioda/ObsDataVector.h.

◆ CASE() [20/29]

ioda::test::CASE ( "ioda/ObsDtype" )

Definition at line 38 of file ObsDtype.h.

◆ CASE() [21/29]

ioda::test::CASE ( "ioda/ObsSpace/testPutDb" )

Definition at line 31 of file ObsSpacePutDbChannels.h.

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◆ CASE() [22/29]

ioda::test::CASE ( "Missing YAML on generate" )

Definition at line 83 of file test-layoutodb.cpp.

◆ CASE() [23/29]

ioda::test::CASE ( "Non-empty inputs of equal element counts" )

Definition at line 20 of file test-concatstringvecs.cpp.

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◆ CASE() [24/29]

ioda::test::CASE ( "One vector input" )

Definition at line 56 of file test-concatstringvecs.cpp.

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◆ CASE() [25/29]

ioda::test::CASE	(	"Stitch	variables,
		remove originals defaulted as true"
	)

Definition at line 26 of file test_stitchcomplementaryvariables.cpp.

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◆ CASE() [26/29]

ioda::test::CASE	(	"Stitch	variables,
		remove originals set to false"
	)

Definition at line 88 of file test_stitchcomplementaryvariables.cpp.

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◆ CASE() [27/29]

ioda::test::CASE ( "Trailing spaces removed" )

Definition at line 64 of file test-concatstringvecs.cpp.

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◆ CASE() [28/29]

ioda::test::CASE ( "Unequal element counts" )

Definition at line 46 of file test-concatstringvecs.cpp.

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◆ CASE() [29/29]

ioda::test::CASE ( "Vertical coordinate mapping file" )

Definition at line 77 of file test-layoutodb.cpp.

◆ frameWrite()

void ioda::test::frameWrite	(	ObsFrameWrite &	obsFrame,
		eckit::LocalConfiguration &	testConfig,
		const Has_Variables &	sourceVars,
		const VarNameObjectList &	varList,
		const VarNameObjectList &	dimVarList,
		const VarDimMap &	varDimMap,
		const Dimensions_t	maxVarSize
	)

Definition at line 114 of file test/io/ObsFrameWrite.h.

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◆ testAccumulateScalar()

template<typename T >

void ioda::test::testAccumulateScalar	(	const Distribution &	TestDist,
		const std::vector< size_t > &	myRecords,
		size_t	expectedSum
	)

Definition at line 38 of file DistributionMethods.h.

◆ testAccumulateVector()

template<typename T >

void ioda::test::testAccumulateVector	(	const Distribution &	TestDist,
		const std::vector< size_t > &	myRecords,
		size_t	expectedSum
	)

Definition at line 48 of file DistributionMethods.h.

◆ testAxpy()

void ioda::test::testAxpy ( )

tests ObsVector::axpy methods

Tests the following for a random vector vec1:

Calling ObsVector::axpy with a single number (2.0) returns the same result as calling it with a vector of 2.0
Calling ObsVector::axpy with vectors of coefficients that differ across variables gives reasonable result. axpy is called twice, the coefficients between the two different calls add to 2.0.

Definition at line 207 of file test/ioda/ObsVector.h.

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◆ testCleanup()

void ioda::test::testCleanup ( )

Definition at line 580 of file test/ioda/ObsSpace.h.

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◆ testConstructor()

void ioda::test::testConstructor ( )

Definition at line 56 of file test/distribution/Distribution.h.

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◆ testCopyConstructor()

void ioda::test::testCopyConstructor ( )

Definition at line 99 of file test/ioda/ObsVector.h.

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◆ testDerivedObsError()

void ioda::test::testDerivedObsError ( )

Definition at line 560 of file test/ioda/ObsSpace.h.

◆ testDescendingSort()

void ioda::test::testDescendingSort ( const eckit::LocalConfiguration & conf )

Definition at line 31 of file DescendingSort.h.

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◆ testDistributedMath()

void ioda::test::testDistributedMath ( )

Definition at line 278 of file test/ioda/ObsVector.h.

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◆ testDistribution()

void ioda::test::testDistribution	(	const eckit::Configuration &	config,
		const eckit::Configuration &	MyRankConfig,
		const ioda::Distribution *	TestDist,
		const std::vector< std::size_t > &	Index,
		const std::vector< std::size_t > &	Recnums
	)

Definition at line 80 of file test/distribution/Distribution.h.

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◆ testDistributionConstructedByObsSpace()

void ioda::test::testDistributionConstructedByObsSpace ( )

Definition at line 281 of file test/distribution/Distribution.h.

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◆ testDistributionConstructedManually()

void ioda::test::testDistributionConstructedManually ( )

Definition at line 210 of file test/distribution/Distribution.h.

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◆ testDistributionMethods()

void ioda::test::testDistributionMethods ( )

Definition at line 150 of file DistributionMethods.h.

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◆ testDotProduct()

void ioda::test::testDotProduct ( )

tests ObsVector::dot_product methods

Tests the following for a random vector vec1:

Calling ObsVector::dot_product and calling ObsVector::multivar_dot_product are consistent.

Definition at line 249 of file test/ioda/ObsVector.h.

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◆ testExtendedObsSpace()

void ioda::test::testExtendedObsSpace ( const eckit::LocalConfiguration & conf )

Definition at line 33 of file ExtendedObsSpace.h.

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◆ testFrameRead()

void ioda::test::testFrameRead	(	ObsFrameRead &	obsFrame,
		eckit::LocalConfiguration &	obsConfig,
		ioda::ObsSpaceParameters &	obsParams
	)

Definition at line 47 of file test/io/ObsFrameRead.h.

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◆ testGetDb()

void ioda::test::testGetDb ( )

Definition at line 190 of file test/ioda/ObsSpace.h.

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◆ testIndexRecnum()

void ioda::test::testIndexRecnum ( )

Definition at line 142 of file ObsSpaceIndexRecnum.h.

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◆ testInvalidNumeric()

void ioda::test::testInvalidNumeric ( )

Definition at line 79 of file ObsSpaceInvalidNumeric.h.

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◆ testMaxScalar()

template<typename T >

void ioda::test::testMaxScalar	(	const Distribution &	TestDist,
		const std::vector< size_t > &	myRecords,
		size_t	expectedMax
	)

Definition at line 83 of file DistributionMethods.h.

◆ testMaxVector()

template<typename T >

void ioda::test::testMaxVector	(	const Distribution &	TestDist,
		const std::vector< size_t > &	myRecords,
		size_t	expectedMax
	)

Definition at line 97 of file DistributionMethods.h.

◆ testMinScalar()

template<typename T >

void ioda::test::testMinScalar	(	const Distribution &	TestDist,
		const std::vector< size_t > &	myRecords,
		size_t	expectedMin
	)

Definition at line 117 of file DistributionMethods.h.

◆ testMinVector()

template<typename T >

void ioda::test::testMinVector	(	const Distribution &	TestDist,
		const std::vector< size_t > &	myRecords,
		size_t	expectedMin
	)

Definition at line 131 of file DistributionMethods.h.

◆ testMultiDimTransfer()

void ioda::test::testMultiDimTransfer ( )

Definition at line 449 of file test/ioda/ObsSpace.h.

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◆ testNotZero()

void ioda::test::testNotZero ( )

Definition at line 118 of file test/ioda/ObsVector.h.

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◆ testObsVariables()

void ioda::test::testObsVariables ( )

Definition at line 537 of file test/ioda/ObsSpace.h.

◆ testPackEigen()

void ioda::test::testPackEigen ( )

tests ObsVector::packEigen, packEigenSize methods and mask methods

Tests that:

number of local masked obs returned by ObsVector::packEigenSize is the same as reference in yaml (reference local masked nobs);
norm of Eigen::VectorXd returned by ObsVector::packEigen is close to the reference specified in yaml (reference local masked norm);
norm of a random vector with mask applied is different from the same vector before mask application;
norm of a random vector with mask(ObsDataVector<int>) applied is the same as norm of the same vector with mask(ObsVector).

Definition at line 45 of file ObsVectorPackEigen.h.

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◆ testPrint()

template<typename T >

void ioda::test::testPrint ( const std::string & datatype )

Definition at line 67 of file test/ioda/ObsDataVector.h.

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◆ testPutDb()

void ioda::test::testPutDb ( )

Definition at line 299 of file test/ioda/ObsSpace.h.

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◆ testPutGetChanSelect()

void ioda::test::testPutGetChanSelect ( )

Definition at line 335 of file test/ioda/ObsSpace.h.

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◆ testRead()

void ioda::test::testRead ( )

Definition at line 105 of file test/io/ObsFrameRead.h.

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◆ testSave()

void ioda::test::testSave ( )

Definition at line 167 of file test/ioda/ObsVector.h.

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◆ testWrite()

void ioda::test::testWrite ( )

Definition at line 172 of file test/io/ObsFrameWrite.h.

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◆ testWriteableGroup()

void ioda::test::testWriteableGroup ( )

Definition at line 400 of file test/ioda/ObsSpace.h.

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◆ trim()

std::string ioda::test::trim ( const std::string & str )

Definition at line 57 of file test/ioda/ObsDataVector.h.

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Variable Documentation

◆ channels

const int ioda::test::channels = 30

Definition at line 27 of file test_convertvariableunits.cpp.

◆ locations

const int ioda::test::locations = 40

Definition at line 26 of file test_convertvariableunits.cpp.

Classes

Functions

Variables

Function Documentation

◆ buildTestObsGroup()

◆ CASE() [1/29]

◆ CASE() [2/29]

◆ CASE() [3/29]

◆ CASE() [4/29]

◆ CASE() [5/29]

◆ CASE() [6/29]

◆ CASE() [7/29]

◆ CASE() [8/29]

◆ CASE() [9/29]

◆ CASE() [10/29]

◆ CASE() [11/29]

◆ CASE() [12/29]

◆ CASE() [13/29]

◆ CASE() [14/29]

◆ CASE() [15/29]

◆ CASE() [16/29]

◆ CASE() [17/29]

◆ CASE() [18/29]

◆ CASE() [19/29]

◆ CASE() [20/29]

◆ CASE() [21/29]

◆ CASE() [22/29]

◆ CASE() [23/29]

◆ CASE() [24/29]

◆ CASE() [25/29]

◆ CASE() [26/29]

◆ CASE() [27/29]

◆ CASE() [28/29]

◆ CASE() [29/29]

◆ frameWrite()

◆ testAccumulateScalar()

◆ testAccumulateVector()

◆ testAxpy()

◆ testCleanup()

◆ testConstructor()

◆ testCopyConstructor()

◆ testDerivedObsError()

◆ testDescendingSort()

◆ testDistributedMath()

◆ testDistribution()

◆ testDistributionConstructedByObsSpace()

◆ testDistributionConstructedManually()

◆ testDistributionMethods()

◆ testDotProduct()

◆ testExtendedObsSpace()

◆ testFrameRead()

◆ testGetDb()

◆ testIndexRecnum()

◆ testInvalidNumeric()

◆ testMaxScalar()

◆ testMaxVector()

◆ testMinScalar()

◆ testMinVector()

◆ testMultiDimTransfer()

◆ testNotZero()

◆ testObsVariables()

◆ testPackEigen()

◆ testPrint()

◆ testPutDb()

◆ testPutGetChanSelect()

◆ testRead()

◆ testSave()

◆ testWrite()

◆ testWriteableGroup()

◆ trim()

Variable Documentation

◆ channels

◆ locations