Namespaces
	anonymous_namespace{AtlasDistribution.cc}

	anonymous_namespace{DistributionUtils.cc}

	anonymous_namespace{ObsSpace.cc}

	anonymous_namespace{RoundRobin.cc}

	chunking
	A few chunking strategies for Variables.

	detail

	Engines
	The backends that implement the ioda-engines functionality.

	FillValuePolicies
	Holds the different default fill values used in ioda files produced by different backends.

	ioda

	ObsStore

	Selections

	test

	Types
	Defines the type system used for manipulating IODA objects.

Classes
struct	FileFormatParameterTraitsHelper
	Helps with the conversion of FileFormat values to/from strings. More...

struct	ObsDtypeParameterTraitsHelper
	Helps with the conversion of ObsDtype values to/from strings. More...

class	Accumulator
	Calculates the sum of a location-dependent quantity of type `T` over locations held on all PEs, each taken into account only once even if it's held on multiple PEs. More...

class	Accumulator< std::vector< T > >
	Calculates the sums of multiple location-dependent quantities of type `T` over locations held on all PEs, each taken into account only once even if it's held on multiple PEs. More...

class	AtlasDistribution
	Distribution assigning each record to the process owning the Atlas mesh partition containing the location of the first observation in that record. More...

class	Distribution
	class for distributing obs across multiple process elements More...

class	DistributionFactory
	Distribution factory. More...

class	DistributionMaker
	A class able to instantiate objects of type T, which should be a subclass of Distribution. More...

class	GeneralDistributionAccumulator
	Implementation of the Accumulator interface suitable for any (possibly overlapping) distribution, but potentially less efficient than specialized implementations. More...

class	GeneralDistributionAccumulator< std::vector< T > >

class	Halo
	Halo distribution. More...

class	InefficientDistribution
	Inefficient distribution. More...

class	InefficientDistributionAccumulator
	Implementation of the Accumulator interface suitable for the InefficientDistribution. More...

class	InefficientDistributionAccumulator< std::vector< T > >

class	NonoverlappingDistribution
	Implements some methods of Distribution in a manner suitable for distributions storing each observation on one and only one process. More...

class	NonoverlappingDistributionAccumulator
	Implementation of the Accumulator interface suitable for the NonoverlappingDistribution. More...

class	NonoverlappingDistributionAccumulator< std::vector< T > >

class	PairOfDistributions
	Represents a concatenation of locations and records from two distributions. More...

class	PairOfDistributionsAccumulator
	Implementation of the Accumulator interface suitable for the PairOfDistributions. More...

class	PairOfDistributionsAccumulator< std::vector< T > >

class	ReplicaOfGeneralDistribution

class	ReplicaOfNonoverlappingDistribution
	Distribution assigning each record to a process if and only if a non-overlapping master distribution has done the same. More...

class	RoundRobin
	Round robin distribution. More...

class	Attribute
	This class represents attributes, which may be attached to both Variables and Groups. More...

class	Attribute_Creator
	Flywheel creation of ioda::Attribute. More...

class	Attribute_Creator_Store
	Flywheel creation of ioda::Attribute objects.This is needed because you might want to make the same Attribute in multiple places. More...

class	Has_Attributes
	This class exists inside of ioda::Group or ioda::Variable and provides the interface to manipulating Attributes. More...

class	ObjectSelection
	Allows you to select objects for a copy operation. More...

struct	ScaleMapping
	Settings for how to remap dimension scales. More...

class	Exception
	The ioda exception class. More...

class	Group
	Groups are a new implementation of ObsSpaces. More...

struct	Dimensions
	Describes the dimensions of an Attribute or Variable. More...

struct	ScaleSizes

struct	NewDimensionScale_Base
	Used to specify a new dimension scale when making an ObsSpace. More...

struct	NewDimensionScale_Object
	Used to specify a new dimension scale when making an ObsSpace. Templated version of NewDimensionScale_Base. More...

struct	ComplementaryVariableCreationParameters

class	Options
	Quick and easy key-value container that stringifies all values. More...

class	ObsGroup
	An ObsGroup is a specialization of a ioda::Group. It provides convenience functions and guarantees that the ioda data are well-formed. More...

struct	Marshalled_Data
	Structure used to pass data between the frontend and the backend engine. More...

class	Type
	Represents the "type" (i.e. integer, string, float) of a piece of data. More...

struct	VariableCreationParameters
	Used to specify Variable creation-time properties. More...

struct	NewVariable_Base
	Used to specify a new variable with the collective createWithScales function. More...

class	Has_Variables
	This class exists inside of ioda::Group and provides the interface to manipulating Variables. More...

class	Selection
	A Selection represents the bounds of the data, in ioda or in userspace, that you are reading or writing. More...

class	Variable
	Variables store data! More...

struct	Named_Variable
	A named pair of (variable_name, ioda::Variable). More...

class	ObsFrame

class	ObsFrameRead
	Implementation of ObsFrameRead class. More...

class	ObsFrameWrite
	Implementation of ObsFrameWrite class. More...

class	ObsIo

class	ObsIoFactory

class	ObsIoMaker

class	ObsIoFileCreate
	Implementation of ObsIo creating a file. More...

class	ObsIoFileRead
	Implementation of ObsIo reading data from a file. More...

class	ObsIoGenerateList
	Implementation of ObsIo generating observations at locations specified in the input YAML file (parsed earlier into the ObsGenerateListParameters object passed to the constructor). More...

class	ObsIoGenerateRandom
	Implementation of ObsIo generating observations at random locations. More...

class	ObsGroupingParameters
	Options controlling the manner in which observations are grouped into records. More...

class	ObsIoParametersBase
	Base of classes storing the configuration parameters of ObsIo subclasses. More...

struct	IodaTrait

class	TimeIodaIO

class	ObsDataVector
	ObsDataVector<DATATYPE> handles vectors of data of type DATATYPE in observation space. More...

class	ObsDimInfo

struct	ConvertType
	Template handlers for implicit variable conversion. More...

struct	ConvertType< double >

class	ObsSpace
	Observation data class for IODA. More...

class	ObsFileInParameters

class	ObsFileOutParameters

class	ObsExtendParameters

class	ObsGenerateParametersBase

class	EmbeddedObsGenerateRandomParameters

class	ObsGenerateRandomParameters
	Options controlling the ObsIoGenerateRandom class. More...

class	EmbeddedObsGenerateListParameters

class	ObsGenerateListParameters
	Options controlling the ObsIoGenerateList class. More...

class	LegacyObsGenerateParameters
	Options in the 'generate' YAML section. More...

class	ObsIoParametersWrapper

class	ObsTopLevelParameters

class	ObsSpaceParameters

class	ObsVector
	ObsVector class to handle vectors in observation space for IODA. More...

Typedefs
typedef std::vector< std::pair< std::string, Variable > >	VarNameObjectList
	typedef for holding list of variable names with associated variable object More...

typedef std::map< std::string, std::vector< std::string > >	VarDimMap
	typedef for holding dim names attached to variables More...

typedef std::vector< std::shared_ptr< NewDimensionScale_Base > >	NewDimensionScales_t

template<typename DataType >
using	Object_Accessor = typename detail::Object_AccessorTypedef< DataType >::type

typedef std::vector< Variable >	NewVariables_Scales_t

typedef std::vector< std::shared_ptr< NewVariable_Base > >	NewVariables_t

template<typename DATATYPE >
using	ObsDataRow = std::vector< DATATYPE >

Enumerations
enum class	FileFormat { AUTO , HDF5 , ODB }
	Observation file format. More...

enum class	ioda_Eigen_Resize { Resize , No_Resize }
	Do we want to auto-resize the Eigen object on read to fit the data being read? More...

enum class	BasicTypes { undefined_ , float_ , double_ , ldouble_ , char_ , short_ , ushort_ , int_ , uint_ , lint_ , ulint_ , llint_ , ullint_ , int32_ , uint32_ , int16_ , uint16_ , int64_ , uint64_ , bool_ , str_ }

enum class	FillValuePolicy { HDF5 , NETCDF4 }
	This option describes the default fill values that will be used if the user does not manually specify a fill value. More...

enum class	SelectionOperator { SET , OR , AND , XOR , NOT_B , NOT_A , APPEND , PREPEND }
	Selection enum. More...

enum class	SelectionState { ALL , NONE }
	The "default" for the selection. More...

enum class	ObsIoModes { READ , WRITE }

enum class	ObsDtype { None , Float , Integer , String , DateTime }

enum class	ObsDimensionId { Nlocs , Nchans }

Functions
FileFormat	determineFileFormat (const std::string &filePath, FileFormat hint)
	Determine the format of an observation file. More...

std::vector< std::size_t >	CharShapeFromStringVector (const std::vector< std::string > &StringVector)

std::vector< std::string >	CharArrayToStringVector (const char *CharData, const std::vector< std::size_t > &CharShape)

void	StringVectorToCharArray (const std::vector< std::string > &StringVector, const std::vector< std::size_t > &CharShape, char *CharData)

std::string	TypeIdName (const std::type_info &TypeId)

std::size_t	FindMaxStringLength (const std::vector< std::string > &StringVector)

std::string	fullVarName (const std::string &groupName, const std::string &varName)
	form full variable name given individual group and variable names More...

void	collectVarDimInfo (const ObsGroup &obsGroup, VarNameObjectList &varObjectList, VarNameObjectList &dimVarObjectList, VarDimMap &dimsAttachedToVars, Dimensions_t &maxVarSize0)
	collect variable and dimension information from a ioda ObsGroup More...

std::type_index	varDtype (const Group &group, const std::string &varName)
	get variable data type More...

bool	varIsDimScale (const Group &group, const std::string &varName)
	true if variable is a dimension scale More...

std::vector< util::DateTime >	convertDtStringsToDtime (const std::vector< std::string > &dtStrings)
	convert datetime strings to DateTime object More...

std::vector< util::DateTime >	convertRefOffsetToDtime (const int refIntDtime, const std::vector< float > &timeOffsets)
	convert reference, time to DateTime object More...

std::vector< std::string >	StringArrayToStringVector (const std::vector< std::string > &arrayData, const std::vector< Dimensions_t > &arrayShape)
	convert 2D string array to a vector of strings More...

void	setOfileParamsFromTestConfig (const eckit::LocalConfiguration &obsConfig, ioda::ObsSpaceParameters &obsParams)
	set params for output file construction from test YAML configuration More...

std::string	uniquifyFileName (const std::string &fileName, const std::size_t rankNum, const int timeRankNum)
	uniquify the output file name More...

std::string	convertNewVnameToOldVname (const std::string &varName)
	convert the new format varible name to the old format More...

VarDimMap	genDimsAttachedToVars (const Has_Variables &varContainer, const std::vector< std::string > &varList, const std::vector< std::string > &dimVarList)
	form a map containing lists of dimension variables that are attached to each variable More...

template<typename FromType , typename ToType >
void	ConvertVarType (const std::vector< FromType > &FromVar, std::vector< ToType > &ToVar)

const ObsSpace *	obsspace_construct_f (const eckit::Configuration conf, const util::DateTime begin, const util::DateTime *end)

void	obsspace_destruct_f (ObsSpace *obss)

void	obsspace_obsname_f (const ObsSpace &obss, size_t &lcname, char *cname)

const oops::Variables *	obsspace_obsvariables_f (const ObsSpace &obss)

std::size_t	obsspace_get_gnlocs_f (const ObsSpace &obss)

std::size_t	obsspace_get_nlocs_f (const ObsSpace &obss)

std::size_t	obsspace_get_nchans_f (const ObsSpace &obss)

std::size_t	obsspace_get_nrecs_f (const ObsSpace &obss)

std::size_t	obsspace_get_nvars_f (const ObsSpace &obss)

void	obsspace_get_dim_name_f (const ObsSpace &obss, const int &dim_id, std::size_t &len_dim_name, char *dim_name)

std::size_t	obsspace_get_dim_size_f (const ObsSpace &obss, const int &dim_id)

int	obsspace_get_dim_id_f (const ObsSpace &obss, const char *dim_name)

void	obsspace_get_comm_f (const ObsSpace &obss, int &lcname, char *cname)

void	obsspace_get_recnum_f (const ObsSpace &obss, const std::size_t &length, std::size_t *recnum)

void	obsspace_get_index_f (const ObsSpace &obss, const std::size_t &length, std::size_t *index)

bool	obsspace_has_f (const ObsSpace &obss, const char group, const char vname)

void	obsspace_get_int32_f (const ObsSpace &obss, const char group, const char vname, const std::size_t &length, int32_t vec, const std::size_t &len_cs, int chan_select)

void	obsspace_get_int64_f (const ObsSpace &obss, const char group, const char vname, const std::size_t &length, int64_t vec, const std::size_t &len_cs, int chan_select)

void	obsspace_get_real32_f (const ObsSpace &obss, const char group, const char vname, const std::size_t &length, float vec, const std::size_t &len_cs, int chan_select)

void	obsspace_get_real64_f (const ObsSpace &obss, const char group, const char vname, const std::size_t &length, double vec, const std::size_t &len_cs, int chan_select)

void	obsspace_get_datetime_f (const ObsSpace &obss, const char group, const char vname, const std::size_t &length, int32_t date, int32_t time, const std::size_t &len_cs, int *chan_select)

void	obsspace_put_int32_f (ObsSpace &obss, const char group, const char vname, const std::size_t &length, int32_t vec, const std::size_t &ndims, int dim_ids)

void	obsspace_put_int64_f (ObsSpace &obss, const char group, const char vname, const std::size_t &length, int64_t vec, const std::size_t &ndims, int dim_ids)

void	obsspace_put_real32_f (ObsSpace &obss, const char group, const char vname, const std::size_t &length, float vec, const std::size_t &ndims, int dim_ids)

void	obsspace_put_real64_f (ObsSpace &obss, const char group, const char vname, const std::size_t &length, double vec, const std::size_t &ndims, int dim_ids)

int	obsspace_get_nlocs_dim_id_f ()

int	obsspace_get_nchans_dim_id_f ()

double	dotProduct (const Distribution &dist, std::size_t numVariables, const std::vector< double > &v1, const std::vector< double > &v2)

double	dotProduct (const Distribution &dist, std::size_t numVariables, const std::vector< float > &v1, const std::vector< float > &v2)

double	dotProduct (const Distribution &dist, std::size_t numVariables, const std::vector< int > &v1, const std::vector< int > &v2)

std::size_t	globalNumNonMissingObs (const Distribution &dist, std::size_t numVariables, const std::vector< double > &v)

std::size_t	globalNumNonMissingObs (const Distribution &dist, std::size_t numVariables, const std::vector< float > &v)

std::size_t	globalNumNonMissingObs (const Distribution &dist, std::size_t numVariables, const std::vector< int > &v)

std::size_t	globalNumNonMissingObs (const Distribution &dist, std::size_t numVariables, const std::vector< std::string > &v)

std::size_t	globalNumNonMissingObs (const Distribution &dist, std::size_t numVariables, const std::vector< util::DateTime > &v)

std::shared_ptr< Distribution >	createReplicaDistribution (const eckit::mpi::Comm &comm, std::shared_ptr< const Distribution > master, const std::vector< std::size_t > &masterRecordNums)
	Create a suitable replica distribution for the distribution `master`. More...

std::size_t	globalNumNonMissingObs (const Distribution &dist, size_t numVariables, const std::vector< float > &v)

std::size_t	globalNumNonMissingObs (const Distribution &dist, size_t numVariables, const std::vector< int > &v)

std::size_t	globalNumNonMissingObs (const Distribution &dist, size_t numVariables, const std::vector< std::string > &v)

std::size_t	globalNumNonMissingObs (const Distribution &dist, size_t numVariables, const std::vector< util::DateTime > &v)

IODA_DL void	copy (const ObjectSelection &from, ObjectSelection &to, const ScaleMapping &scale_map)
	Generic data copying function. More...

IODA_DL void	unwind_exception_stack (const std::exception &e, std::ostream &out=std::cerr, int level=0)
	Convenience function for unwinding an exception stack. More...

template<class DataType >
std::shared_ptr< NewDimensionScale_Object< DataType > >	NewDimensionScale (const std::string &name, Dimensions_t size, Dimensions_t maxSize=Unspecified, Dimensions_t chunkingSize=Unspecified)
	Wrapper function used when listing new dimension scales to construct. More...

template<class DataType >
std::shared_ptr< NewDimensionScale_Object< DataType > >	NewDimensionScale (const std::string &name, ScaleSizes sizes)

IODA_DL std::shared_ptr< NewDimensionScale_Base >	NewDimensionScale (const std::string &name, const Type &t, Dimensions_t size, Dimensions_t maxSize=Unspecified, Dimensions_t chunkingSize=Unspecified)

IODA_DL std::shared_ptr< NewDimensionScale_Base >	NewDimensionScale (const std::string &name, const Variable &scale, const ScaleSizes &overrides=ScaleSizes())

IODA_DL std::vector< std::string >	splitPaths (const std::string &p)
	Split a string based on occurances of the '/' character. More...

IODA_DL std::string	condensePaths (const std::vector< std::string > &p, size_t start=0, size_t end=std::string::npos)
	The inverse of splitPaths. Concatenate strings, separating with '/'. More...

IODA_DL std::vector< std::string >	concatenateStringVectors (const std::vector< std::vector< std::string >> &stringVectors)
	Concatenate equal-length vectors of strings element-by-element. Removes trailing spaces. More...

IODA_DL std::string	convertV1PathToV2Path (const std::string &path)
	Split `path` into substrings separated by `@` characters, then concatenate them in reverse order, replacing the `@`s with `/`s. More...

IODA_DL void	convertColumn (const std::string &unit, std::vector< double > &dataToConvert)

IODA_DL std::string	getSIUnit (const std::string &unit)

template<class DataType , bool FreeOnClose>
void	FreeType (DataType, typename std::enable_if<!std::is_pointer< DataType >::value >::type *=0)

template<class DataType , bool FreeOnClose>
void	FreeType (DataType, typename std::enable_if< std::is_pointer< DataType >::value >::type =0, typename std::enable_if<!FreeOnClose >::type =0)

template<class DataType , bool FreeOnClose>
void	FreeType (DataType d, typename std::enable_if< std::is_pointer< DataType >::value >::type =0, typename std::enable_if< FreeOnClose >::type =0)

template<class DataType >
std::shared_ptr< NewVariable_Base >	NewVariable (const std::string &name, const NewVariables_Scales_t &scales, const VariableCreationParameters &params=VariableCreationParameters::defaulted< DataType >())

std::shared_ptr< NewVariable_Base >	NewVariable (const std::string &name, const Type &DataType, const NewVariables_Scales_t &scales, const VariableCreationParameters &params=VariableCreationParameters())

std::vector< std::string >	concatenateStringVectors (const std::vector< std::vector< std::string > > &stringVectors)

void	storeGenData (const std::vector< float > &latVals, const std::vector< float > &lonVals, const std::vector< std::string > &dtStrings, const std::vector< std::string > &obsVarNames, const std::vector< float > &obsErrors, ObsGroup &obsGroup)
	store generated data into an ObsGroup More...

template<typename DATATYPE >
void	printNonnumericObsDataVectorStats (const ObsDataVector< DATATYPE > &obsdatavector, const ObsSpace &obsdb, std::ostream &os)

template<typename DATATYPE >
void	printNumericObsDataVectorStats (const ObsDataVector< DATATYPE > &obsdatavector, const ObsSpace &obsdb, std::ostream &os)

Variables
static DistributionMaker< AtlasDistribution >	maker (DIST_NAME)

static DistributionMaker< Halo >	maker ("Halo")

static DistributionMaker< InefficientDistribution >	maker ("InefficientDistribution")

static DistributionMaker< RoundRobin >	maker (DIST_NAME)

constexpr int	Unlimited = -1
	Specifies that a dimension is resizable to infinity. More...

constexpr int	Unspecified = -2
	Specifies that a dimension has no specified size. Tells ioda to figure it out from elsewhere. More...

static ObsIoMaker< ObsIoFileCreate >	maker ("FileCreate")

static ObsIoMaker< ObsIoFileRead >	maker ("FileRead")

static ObsIoMaker< ObsIoGenerateList >	maker ("GenerateList")

static ObsIoMaker< ObsIoGenerateRandom >	maker ("GenerateRandom")

constexpr int	DEFAULT_FRAME_SIZE = 10000

Typedef Documentation

◆ NewDimensionScales_t

typedef std::vector<std::shared_ptr<NewDimensionScale_Base> > ioda::NewDimensionScales_t

Definition at line 89 of file DimensionScales.h.

◆ NewVariables_Scales_t

typedef std::vector<Variable> ioda::NewVariables_Scales_t

Definition at line 147 of file Has_Variables.h.

◆ NewVariables_t

typedef std::vector<std::shared_ptr<NewVariable_Base> > ioda::NewVariables_t

Definition at line 178 of file Has_Variables.h.

◆ ObsDataRow

template<typename DATATYPE >

using ioda::ObsDataRow = typedef std::vector<DATATYPE>

Definition at line 37 of file src/ObsDataVector.h.

◆ VarDimMap

typedef std::map<std::string, std::vector<std::string> > ioda::VarDimMap

typedef for holding dim names attached to variables

Definition at line 36 of file IodaUtils.h.

◆ VarNameObjectList

typedef std::vector<std::pair<std::string, Variable> > ioda::VarNameObjectList

typedef for holding list of variable names with associated variable object

Definition at line 33 of file IodaUtils.h.

Enumeration Type Documentation

◆ BasicTypes

enum ioda::BasicTypes

strong

Basic pre-defined types (Python convenience wrappers)

See also: py_ioda.cpp

Note: Names here do not match the python equivalents. The Python names match numpy's definitions.

Enumerator
undefined_	Internal use only.
float_
double_
ldouble_
char_
short_
ushort_
int_
uint_
lint_
ulint_
llint_
ullint_
int32_
uint32_
int16_
uint16_
int64_
uint64_
bool_
str_

Definition at line 37 of file Type.h.

◆ FileFormat

enum ioda::FileFormat

strong

Observation file format.

Enumerator
AUTO	File format determined automatically from the file name extension (`.odb` – ODB, everything else – HDF5).
HDF5	HDF5 file format.
ODB	ODB file format.

Definition at line 19 of file src/core/FileFormat.h.

◆ ioda_Eigen_Resize

enum ioda::ioda_Eigen_Resize

strong

Do we want to auto-resize the Eigen object on read to fit the data being read?

Enumerator
Resize	Yes.
No_Resize	No.

Definition at line 41 of file Eigen_Compat.h.

◆ ObsDimensionId

enum ioda::ObsDimensionId

strong

Enumerator
Nlocs
Nchans

Definition at line 61 of file src/ObsSpace.h.

◆ ObsDtype

enum ioda::ObsDtype

strong

Enumerator
None
Float
Integer
String

Definition at line 49 of file src/ObsSpace.h.

◆ ObsIoModes

enum ioda::ObsIoModes

strong

Enumerator
READ
WRITE

Definition at line 24 of file ObsIoFactory.h.

Function Documentation

◆ CharArrayToStringVector()

std::vector< std::string > ioda::CharArrayToStringVector	(	const char *	CharData,
		const std::vector< std::size_t > &	CharShape
	)

Definition at line 36 of file IodaUtils.cc.

◆ CharShapeFromStringVector()

std::vector< std::size_t > ioda::CharShapeFromStringVector ( const std::vector< std::string > & StringVector )

Definition at line 20 of file IodaUtils.cc.

◆ collectVarDimInfo()

void ioda::collectVarDimInfo	(	const ObsGroup &	obsGroup,
		VarNameObjectList &	varObjectList,
		VarNameObjectList &	dimVarObjectList,
		VarDimMap &	dimsAttachedToVars,
		Dimensions_t &	maxVarSize0
	)

collect variable and dimension information from a ioda ObsGroup

It is assumed that the input ObsGroup has been populated. For example you open an existing hdf5 file, and then call this routing to collect the information. The information collected is passed back through the output parameters (last 4 parameters) of this routine.

The reason for collecting all of this information in a single routine is to handle severe performance issues with the HDF5 library when inspecting an ObsGroup based on an HDF5 backend.

Parameters

obsGroup	ioda ObsGroup object
varObjectList	list of regular variable names with associated Variable objects
dimVarObjectList	list of dimension variable names with associated Variable objects
dimsAttachedToVars	map structure holding list of dimension scale names attached each regular variable
maxVarSize0	maximum var length along the first (0th) dimension

Definition at line 125 of file IodaUtils.cc.

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◆ concatenateStringVectors() [1/2]

std::vector<std::string> ioda::concatenateStringVectors ( const std::vector< std::vector< std::string > > & stringVectors )

Definition at line 57 of file StringFuncs.cpp.

◆ concatenateStringVectors() [2/2]

IODA_DL std::vector<std::string> ioda::concatenateStringVectors ( const std::vector< std::vector< std::string >> & stringVectors )

Concatenate equal-length vectors of strings element-by-element. Removes trailing spaces.

Parameters

stringVectors represents the vectors of strings all stored together in one vector.

Returns: The resulting vector of strings.

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◆ convertColumn()

void ioda::convertColumn	(	const std::string &	unit,
		std::vector< double > &	dataToConvert
	)

Definition at line 16 of file UnitConversions.cpp.

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◆ convertDtStringsToDtime()

std::vector<util::DateTime> ioda::convertDtStringsToDtime ( const std::vector< std::string > & dtStrings )

convert datetime strings to DateTime object

Parameters

dtStrings datetime strings

Definition at line 239 of file IodaUtils.cc.

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◆ convertNewVnameToOldVname()

std::string ioda::convertNewVnameToOldVname ( const std::string & varName )

convert the new format varible name to the old format

Parameters

varName new format variable name

Definition at line 365 of file IodaUtils.cc.

◆ convertRefOffsetToDtime()

std::vector<util::DateTime> ioda::convertRefOffsetToDtime	(	const int	refIntDtime,
		const std::vector< float > &	timeOffsets
	)

convert reference, time to DateTime object

Parameters

refDtime	reference date time
timeOffets	offset time values (in hours)

Definition at line 251 of file IodaUtils.cc.

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◆ convertV1PathToV2Path()

std::string ioda::convertV1PathToV2Path ( const std::string & path )

Split path into substrings separated by @ characters, then concatenate them in reverse order, replacing the @s with /s.

For example, longitude@MetaData becomes MetaData/longitude.

Parameters

path	is the path to convert

Returns: The converted path.

Definition at line 85 of file StringFuncs.cpp.

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◆ ConvertVarType()

template<typename FromType , typename ToType >

void ioda::ConvertVarType	(	const std::vector< FromType > &	FromVar,
		std::vector< ToType > &	ToVar
	)

This method will perform numeric data type conversions. This method is aware of the IODA missing values and will convert these appropriately. For example when converting double to float, all double missing values will be replaced with float missing values during the conversion.

Parameters

[in]	FromVar	Vector of variable we are converting from
[out]	ToVar	Vector of variable we are converting to
[in]	VarSize	Total number of elements in FromVar and ToVar.

Definition at line 148 of file IodaUtils.h.

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◆ copy()

void ioda::copy	(	const ObjectSelection &	from,
		ObjectSelection &	to,
		const ScaleMapping &	scale_map
	)

Generic data copying function.

Todo:: This function is not yet complete. It exists in its present form to provide the guts for a timing test. Do not use.

Parameters

from	contains the objects that we are copying
to	contains the destination(s) of the copy
scale_map	contains settings regarding how dimension scales are propagated

Definition at line 63 of file Copying.cpp.

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◆ createReplicaDistribution()

std::shared_ptr<Distribution> ioda::createReplicaDistribution	(	const eckit::mpi::Comm &	comm,
		std::shared_ptr< const Distribution >	master,
		const std::vector< std::size_t > &	masterRecordNums
	)

Create a suitable replica distribution for the distribution master.

A replica distribution assigns each record r to a process if and only if another distribution (the master distribution) has assigned the same record to that process.

Parameters

comm	Communicator used by the master distribution.
master	Master distribution.
masterRecordNums	Records of all observations assigned by the master distribution to the calling process.

Definition at line 121 of file DistributionUtils.cc.

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◆ determineFileFormat()

FileFormat ioda::determineFileFormat	(	const std::string &	filePath,
		FileFormat	hint
	)

Determine the format of an observation file.

Returns hint unless it's set to FileFormat::AUTO, in which case the function returns FileFormat::ODB if filePath ends with .odb (irrespective of case) and FileFormat::HDF5 otherwise.

Definition at line 13 of file FileFormat.cc.

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◆ dotProduct() [1/3]

double ioda::dotProduct	(	const Distribution &	dist,
		std::size_t	numVariables,
		const std::vector< double > &	v1,
		const std::vector< double > &	v2
	)

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◆ dotProduct() [2/3]

double ioda::dotProduct	(	const Distribution &	dist,
		std::size_t	numVariables,
		const std::vector< float > &	v1,
		const std::vector< float > &	v2
	)

Definition at line 75 of file DistributionUtils.cc.

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◆ dotProduct() [3/3]

double ioda::dotProduct	(	const Distribution &	dist,
		std::size_t	numVariables,
		const std::vector< int > &	v1,
		const std::vector< int > &	v2
	)

Definition at line 82 of file DistributionUtils.cc.

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◆ FindMaxStringLength()

std::size_t ioda::FindMaxStringLength ( const std::vector< std::string > & StringVector )

Definition at line 109 of file IodaUtils.cc.

◆ FreeType() [1/2]

template<class DataType , bool FreeOnClose>

void ioda::FreeType	(	DataType	d,
		typename std::enable_if< std::is_pointer< DataType >::value >::type *	= `0`,
		typename std::enable_if< FreeOnClose >::type *	= `0`
	)

Definition at line 37 of file Marshalling.h.

◆ FreeType() [2/2]

template<class DataType , bool FreeOnClose>

void ioda::FreeType	(	DataType	,
		typename std::enable_if< std::is_pointer< DataType >::value >::type *	= `0`,
		typename std::enable_if<!FreeOnClose >::type *	= `0`
	)

Definition at line 34 of file Marshalling.h.

◆ fullVarName()

std::string ioda::fullVarName	(	const std::string &	groupName,
		const std::string &	varName
	)

form full variable name given individual group and variable names

This routine will form the consistent frontend variable name according

Parameters

groupName	name of group
varName	name of variable

Definition at line 120 of file IodaUtils.cc.

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◆ genDimsAttachedToVars()

VarDimMap ioda::genDimsAttachedToVars	(	const Has_Variables &	varContainer,
		const std::vector< std::string > &	varList,
		const std::vector< std::string > &	dimVarList
	)

form a map containing lists of dimension variables that are attached to each variable

Parameters

varContainer	Has_Variables object with variables to check
varList	list of regular variables
dimVarList	list of dimension scale variables

◆ getSIUnit()

std::string ioda::getSIUnit ( const std::string & unit )

Definition at line 27 of file UnitConversions.cpp.

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◆ globalNumNonMissingObs() [1/9]

std::size_t ioda::globalNumNonMissingObs	(	const Distribution &	dist,
		size_t	numVariables,
		const std::vector< float > &	v
	)

◆ globalNumNonMissingObs() [2/9]

std::size_t ioda::globalNumNonMissingObs	(	const Distribution &	dist,
		size_t	numVariables,
		const std::vector< int > &	v
	)

◆ globalNumNonMissingObs() [3/9]

std::size_t ioda::globalNumNonMissingObs	(	const Distribution &	dist,
		size_t	numVariables,
		const std::vector< std::string > &	v
	)

◆ globalNumNonMissingObs() [4/9]

std::size_t ioda::globalNumNonMissingObs	(	const Distribution &	dist,
		size_t	numVariables,
		const std::vector< util::DateTime > &	v
	)

◆ globalNumNonMissingObs() [5/9]

std::size_t ioda::globalNumNonMissingObs	(	const Distribution &	dist,
		std::size_t	numVariables,
		const std::vector< double > &	v
	)

Definition at line 90 of file DistributionUtils.cc.

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◆ globalNumNonMissingObs() [6/9]

std::size_t ioda::globalNumNonMissingObs	(	const Distribution &	dist,
		std::size_t	numVariables,
		const std::vector< float > &	v
	)

Definition at line 96 of file DistributionUtils.cc.

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◆ globalNumNonMissingObs() [7/9]

std::size_t ioda::globalNumNonMissingObs	(	const Distribution &	dist,
		std::size_t	numVariables,
		const std::vector< int > &	v
	)

Definition at line 102 of file DistributionUtils.cc.

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◆ globalNumNonMissingObs() [8/9]

std::size_t ioda::globalNumNonMissingObs	(	const Distribution &	dist,
		std::size_t	numVariables,
		const std::vector< std::string > &	v
	)

Definition at line 108 of file DistributionUtils.cc.

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◆ globalNumNonMissingObs() [9/9]

std::size_t ioda::globalNumNonMissingObs	(	const Distribution &	dist,
		std::size_t	numVariables,
		const std::vector< util::DateTime > &	v
	)

Definition at line 114 of file DistributionUtils.cc.

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◆ NewDimensionScale() [1/4]

std::shared_ptr< NewDimensionScale_Base > ioda::NewDimensionScale	(	const std::string &	name,
		const Type &	t,
		Dimensions_t	size,
		Dimensions_t	maxSize = `Unspecified`,
		Dimensions_t	chunkingSize = `Unspecified`
	)

Definition at line 17 of file DimensionScales.cpp.

◆ NewDimensionScale() [2/4]

std::shared_ptr< NewDimensionScale_Base > ioda::NewDimensionScale	(	const std::string &	name,
		const Variable &	scale,
		const ScaleSizes &	overrides = `ScaleSizes()`
	)

Definition at line 24 of file DimensionScales.cpp.

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◆ NewDimensionScale() [3/4]

template<class DataType >

std::shared_ptr<NewDimensionScale_Object<DataType> > ioda::NewDimensionScale	(	const std::string &	name,
		Dimensions_t	size,
		Dimensions_t	maxSize = `Unspecified`,
		Dimensions_t	chunkingSize = `Unspecified`
	)

inline

Wrapper function used when listing new dimension scales to construct.

Template Parameters

DataType is the type of data used in the scale.

Parameters

name	is the new scale's name.
size	is the initial size (in elements).
maxSize	is the maximum size, in elements. ioda::Unspecified sets the max dimension size to the initial size. ioda::Unlimited specifies an unlimited dimension, which should be seldom used.
chunkingSize	is a "hint" parameter that guides how data are grouped in memory. New variables using this scale take this hint to specify their chunk sizes.

Returns: A shared_ptr to a NewDimensionScale_Object, which can be inserted into a NewDimensionScales_t container.

Definition at line 125 of file DimensionScales.h.

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◆ NewDimensionScale() [4/4]

template<class DataType >

std::shared_ptr<NewDimensionScale_Object<DataType> > ioda::NewDimensionScale	(	const std::string &	name,
		ScaleSizes	sizes
	)

inline

Definition at line 134 of file DimensionScales.h.

◆ NewVariable() [1/2]

template<class DataType >

std::shared_ptr<NewVariable_Base> ioda::NewVariable	(	const std::string &	name,
		const NewVariables_Scales_t &	scales,
		const VariableCreationParameters &	params = `VariableCreationParameters::defaulted<DataType>()`
	)

inline

Definition at line 181 of file Has_Variables.h.

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◆ NewVariable() [2/2]

std::shared_ptr<NewVariable_Base> ioda::NewVariable	(	const std::string &	name,
		const Type &	DataType,
		const NewVariables_Scales_t &	scales,
		const VariableCreationParameters &	params = `VariableCreationParameters()`
	)

inline

Definition at line 187 of file Has_Variables.h.

◆ obsspace_construct_f()

const ObsSpace * ioda::obsspace_construct_f	(	const eckit::Configuration *	conf,
		const util::DateTime *	begin,
		const util::DateTime *	end
	)

Definition at line 24 of file obsspace_f.cc.

◆ obsspace_destruct_f()

void ioda::obsspace_destruct_f ( ObsSpace * obss )

Definition at line 33 of file obsspace_f.cc.

◆ obsspace_get_comm_f()

void ioda::obsspace_get_comm_f	(	const ObsSpace &	obss,
		int &	lcname,
		char *	cname
	)

Definition at line 90 of file obsspace_f.cc.

◆ obsspace_get_datetime_f()

void ioda::obsspace_get_datetime_f	(	const ObsSpace &	obss,
		const char *	group,
		const char *	vname,
		const std::size_t &	length,
		int32_t *	date,
		int32_t *	time,
		const std::size_t &	len_cs,
		int *	chan_select
	)

Definition at line 170 of file obsspace_f.cc.

◆ obsspace_get_dim_id_f()

int ioda::obsspace_get_dim_id_f	(	const ObsSpace &	obss,
		const char *	dim_name
	)

Definition at line 85 of file obsspace_f.cc.

◆ obsspace_get_dim_name_f()

void ioda::obsspace_get_dim_name_f	(	const ObsSpace &	obss,
		const int &	dim_id,
		std::size_t &	len_dim_name,
		char *	dim_name
	)

Definition at line 73 of file obsspace_f.cc.

◆ obsspace_get_dim_size_f()

std::size_t ioda::obsspace_get_dim_size_f	(	const ObsSpace &	obss,
		const int &	dim_id
	)

Definition at line 81 of file obsspace_f.cc.

◆ obsspace_get_gnlocs_f()

std::size_t ioda::obsspace_get_gnlocs_f ( const ObsSpace & obss )

Definition at line 52 of file obsspace_f.cc.

◆ obsspace_get_index_f()

void ioda::obsspace_get_index_f	(	const ObsSpace &	obss,
		const std::size_t &	length,
		std::size_t *	index
	)

Definition at line 104 of file obsspace_f.cc.

◆ obsspace_get_int32_f()

void ioda::obsspace_get_int32_f	(	const ObsSpace &	obss,
		const char *	group,
		const char *	vname,
		const std::size_t &	length,
		int32_t *	vec,
		const std::size_t &	len_cs,
		int *	chan_select
	)

Definition at line 118 of file obsspace_f.cc.

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◆ obsspace_get_int64_f()

void ioda::obsspace_get_int64_f	(	const ObsSpace &	obss,
		const char *	group,
		const char *	vname,
		const std::size_t &	length,
		int64_t *	vec,
		const std::size_t &	len_cs,
		int *	chan_select
	)

Definition at line 132 of file obsspace_f.cc.

◆ obsspace_get_nchans_dim_id_f()

int ioda::obsspace_get_nchans_dim_id_f ( )

Definition at line 291 of file obsspace_f.cc.

◆ obsspace_get_nchans_f()

std::size_t ioda::obsspace_get_nchans_f ( const ObsSpace & obss )

Definition at line 60 of file obsspace_f.cc.

◆ obsspace_get_nlocs_dim_id_f()

int ioda::obsspace_get_nlocs_dim_id_f ( )

Definition at line 287 of file obsspace_f.cc.

◆ obsspace_get_nlocs_f()

std::size_t ioda::obsspace_get_nlocs_f ( const ObsSpace & obss )

Definition at line 56 of file obsspace_f.cc.

◆ obsspace_get_nrecs_f()

std::size_t ioda::obsspace_get_nrecs_f ( const ObsSpace & obss )

Definition at line 64 of file obsspace_f.cc.

◆ obsspace_get_nvars_f()

std::size_t ioda::obsspace_get_nvars_f ( const ObsSpace & obss )

Definition at line 68 of file obsspace_f.cc.

◆ obsspace_get_real32_f()

void ioda::obsspace_get_real32_f	(	const ObsSpace &	obss,
		const char *	group,
		const char *	vname,
		const std::size_t &	length,
		float *	vec,
		const std::size_t &	len_cs,
		int *	chan_select
	)

Definition at line 144 of file obsspace_f.cc.

◆ obsspace_get_real64_f()

void ioda::obsspace_get_real64_f	(	const ObsSpace &	obss,
		const char *	group,
		const char *	vname,
		const std::size_t &	length,
		double *	vec,
		const std::size_t &	len_cs,
		int *	chan_select
	)

Definition at line 156 of file obsspace_f.cc.

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◆ obsspace_get_recnum_f()

void ioda::obsspace_get_recnum_f	(	const ObsSpace &	obss,
		const std::size_t &	length,
		std::size_t *	recnum
	)

Definition at line 96 of file obsspace_f.cc.

◆ obsspace_has_f()

bool ioda::obsspace_has_f	(	const ObsSpace &	obss,
		const char *	group,
		const char *	vname
	)

Definition at line 114 of file obsspace_f.cc.

◆ obsspace_obsname_f()

void ioda::obsspace_obsname_f	(	const ObsSpace &	obss,
		size_t &	lcname,
		char *	cname
	)

Definition at line 39 of file obsspace_f.cc.

◆ obsspace_obsvariables_f()

const oops::Variables * ioda::obsspace_obsvariables_f ( const ObsSpace & obss )

Definition at line 47 of file obsspace_f.cc.

◆ obsspace_put_int32_f()

void ioda::obsspace_put_int32_f	(	ObsSpace &	obss,
		const char *	group,
		const char *	vname,
		const std::size_t &	length,
		int32_t *	vec,
		const std::size_t &	ndims,
		int *	dim_ids
	)

Definition at line 201 of file obsspace_f.cc.

◆ obsspace_put_int64_f()

void ioda::obsspace_put_int64_f	(	ObsSpace &	obss,
		const char *	group,
		const char *	vname,
		const std::size_t &	length,
		int64_t *	vec,
		const std::size_t &	ndims,
		int *	dim_ids
	)

Definition at line 224 of file obsspace_f.cc.

◆ obsspace_put_real32_f()

void ioda::obsspace_put_real32_f	(	ObsSpace &	obss,
		const char *	group,
		const char *	vname,
		const std::size_t &	length,
		float *	vec,
		const std::size_t &	ndims,
		int *	dim_ids
	)

Definition at line 244 of file obsspace_f.cc.

◆ obsspace_put_real64_f()

void ioda::obsspace_put_real64_f	(	ObsSpace &	obss,
		const char *	group,
		const char *	vname,
		const std::size_t &	length,
		double *	vec,
		const std::size_t &	ndims,
		int *	dim_ids
	)

Definition at line 264 of file obsspace_f.cc.

◆ printNonnumericObsDataVectorStats()

template<typename DATATYPE >

void ioda::printNonnumericObsDataVectorStats	(	const ObsDataVector< DATATYPE > &	obsdatavector,
		const ObsSpace &	obsdb,
		std::ostream &	os
	)

Print statistics describing a vector obsdatavector of observations taken from obsdb to the stream os.

This is an implementation suitable for non-numeric data. Users shouldn't need to call it directly; they should call ObsDataVector::print() instead.

See also: printNumericObsDataVectorStats.

Definition at line 227 of file src/ObsDataVector.h.

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◆ printNumericObsDataVectorStats()

template<typename DATATYPE >

void ioda::printNumericObsDataVectorStats	(	const ObsDataVector< DATATYPE > &	obsdatavector,
		const ObsSpace &	obsdb,
		std::ostream &	os
	)

Print statistics describing a vector obsdatavector of observations taken from obsdb to the stream os.

This is an implementation suitable for numeric data. Users shouldn't need to call it directly; they should call ObsDataVector::print() instead.

See also: printNonnumericObsDataVectorStats.

Definition at line 249 of file src/ObsDataVector.h.

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◆ setOfileParamsFromTestConfig()

void ioda::setOfileParamsFromTestConfig	(	const eckit::LocalConfiguration &	obsConfig,
		ioda::ObsSpaceParameters &	obsParams
	)

set params for output file construction from test YAML configuration

This routine is intended for use by the ObsIo and ObsFrame tests. It relies on test confiruation "test data.write dimensions" and "test data.write variables" accompanying an "obsdataout.obsfile" spec in the YAML configuration.

Parameters

obsConfig	test YAML configuration for and ObsSpace
obsParams	output params

Definition at line 306 of file IodaUtils.cc.

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◆ storeGenData()

void ioda::storeGenData	(	const std::vector< float > &	latVals,
		const std::vector< float > &	lonVals,
		const std::vector< std::string > &	dtStrings,
		const std::vector< std::string > &	obsVarNames,
		const std::vector< float > &	obsErrors,
		ObsGroup &	obsGroup
	)

store generated data into an ObsGroup

Parameters

	latVals	vector of latitude values
	lonVals	vector of longitude values
	dtStrings	vector of datetime (ISO 8601 string) values
	obsVarNames	vector (string) of simulated variable names
	obsErrors	vector of obs error estimates
[out]	obsGroup	destination for the generated data

Definition at line 18 of file ObsIoGenerateUtils.cc.

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◆ StringArrayToStringVector()

std::vector<std::string> ioda::StringArrayToStringVector	(	const std::vector< std::string > &	arrayData,
		const std::vector< Dimensions_t > &	arrayShape
	)

convert 2D string array to a vector of strings

The incoming 2D strings array is passed in through the arrayData argument as a flattened vector. The arrayShape arugument shows how to un-flatten the arrayData.

Parameters

arrayData	Flattened data for input 2D string array
arrayShape	Shape of input arrayData

Definition at line 274 of file IodaUtils.cc.

◆ StringVectorToCharArray()

void ioda::StringVectorToCharArray	(	const std::vector< std::string > &	StringVector,
		const std::vector< std::size_t > &	CharShape,
		char *	CharData
	)

Definition at line 70 of file IodaUtils.cc.

◆ TypeIdName()

std::string ioda::TypeIdName ( const std::type_info & TypeId )

Definition at line 89 of file IodaUtils.cc.

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◆ uniquifyFileName()

std::string ioda::uniquifyFileName	(	const std::string &	fileName,
		const std::size_t	rankNum,
		const int	timeRankNum
	)

uniquify the output file name

This function will tag on the MPI task number to the end of the file name to avoid collisions when running with multiple MPI tasks.

Parameters

fileName	raw output file name
rankNum	MPI group communicator rank number
timeRankNum	MPI time communicator rank number

Definition at line 343 of file IodaUtils.cc.

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◆ unwind_exception_stack()

void ioda::unwind_exception_stack	(	const std::exception &	e,
		std::ostream &	out = `std::cerr`,
		int	level = `0`
	)

Convenience function for unwinding an exception stack.

Definition at line 48 of file Exception.cpp.

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◆ varDtype()

std::type_index ioda::varDtype	(	const Group &	group,
		const std::string &	varName
	)

get variable data type

Definition at line 221 of file IodaUtils.cc.

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◆ varIsDimScale()

bool ioda::varIsDimScale	(	const Group &	group,
		const std::string &	varName
	)

true if variable is a dimension scale

Definition at line 233 of file IodaUtils.cc.

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Variable Documentation

◆ DEFAULT_FRAME_SIZE

constexpr int ioda::DEFAULT_FRAME_SIZE = 10000

constexpr

Definition at line 20 of file ObsIoParametersBase.h.

◆ maker [1/8]

ObsIoMaker<ObsIoFileCreate> ioda::maker("FileCreate") ( "FileCreate" )

static

◆ maker [2/8]

ObsIoMaker<ObsIoFileRead> ioda::maker("FileRead") ( "FileRead" )

static

◆ maker [3/8]

ObsIoMaker<ObsIoGenerateList> ioda::maker("GenerateList") ( "GenerateList" )

static

◆ maker [4/8]

ObsIoMaker<ObsIoGenerateRandom> ioda::maker("GenerateRandom") ( "GenerateRandom" )

static

◆ maker [5/8]

DistributionMaker<Halo> ioda::maker("Halo") ( "Halo" )

static

◆ maker [6/8]

DistributionMaker<InefficientDistribution> ioda::maker("InefficientDistribution") ( "InefficientDistribution" )

static

◆ maker [7/8]

DistributionMaker<AtlasDistribution> ioda::maker(DIST_NAME) ( DIST_NAME )

static

◆ maker [8/8]

DistributionMaker<RoundRobin> ioda::maker(DIST_NAME) ( DIST_NAME )

static

◆ Unlimited

constexpr int ioda::Unlimited = -1

constexpr

Specifies that a dimension is resizable to infinity.

Definition at line 25 of file DimensionScales.h.

◆ Unspecified

constexpr int ioda::Unspecified = -2

constexpr

Specifies that a dimension has no specified size. Tells ioda to figure it out from elsewhere.

Definition at line 27 of file DimensionScales.h.

Namespaces

Classes

Typedefs

Enumerations

Functions

Variables

Typedef Documentation

◆ NewDimensionScales_t

◆ NewVariables_Scales_t

◆ NewVariables_t

◆ ObsDataRow

◆ VarDimMap

◆ VarNameObjectList

Enumeration Type Documentation

◆ BasicTypes

◆ FileFormat

◆ ioda_Eigen_Resize

◆ ObsDimensionId

◆ ObsDtype

◆ ObsIoModes

Function Documentation

◆ CharArrayToStringVector()

◆ CharShapeFromStringVector()

◆ collectVarDimInfo()

◆ concatenateStringVectors() [1/2]

◆ concatenateStringVectors() [2/2]

◆ convertColumn()

◆ convertDtStringsToDtime()

◆ convertNewVnameToOldVname()

◆ convertRefOffsetToDtime()

◆ convertV1PathToV2Path()

◆ ConvertVarType()

◆ copy()

◆ createReplicaDistribution()

◆ determineFileFormat()

◆ dotProduct() [1/3]

◆ dotProduct() [2/3]

◆ dotProduct() [3/3]

◆ FindMaxStringLength()

◆ FreeType() [1/2]

◆ FreeType() [2/2]

◆ fullVarName()

◆ genDimsAttachedToVars()

◆ getSIUnit()

◆ globalNumNonMissingObs() [1/9]

◆ globalNumNonMissingObs() [2/9]

◆ globalNumNonMissingObs() [3/9]

◆ globalNumNonMissingObs() [4/9]

◆ globalNumNonMissingObs() [5/9]

◆ globalNumNonMissingObs() [6/9]

◆ globalNumNonMissingObs() [7/9]

◆ globalNumNonMissingObs() [8/9]

◆ globalNumNonMissingObs() [9/9]

◆ NewDimensionScale() [1/4]

◆ NewDimensionScale() [2/4]

◆ NewDimensionScale() [3/4]

◆ NewDimensionScale() [4/4]

◆ NewVariable() [1/2]

◆ NewVariable() [2/2]

◆ obsspace_construct_f()

◆ obsspace_destruct_f()

◆ obsspace_get_comm_f()

◆ obsspace_get_datetime_f()

◆ obsspace_get_dim_id_f()

◆ obsspace_get_dim_name_f()

◆ obsspace_get_dim_size_f()

◆ obsspace_get_gnlocs_f()

◆ obsspace_get_index_f()

◆ obsspace_get_int32_f()

◆ obsspace_get_int64_f()

◆ obsspace_get_nchans_dim_id_f()

◆ obsspace_get_nchans_f()

◆ obsspace_get_nlocs_dim_id_f()

◆ obsspace_get_nlocs_f()

◆ obsspace_get_nrecs_f()

◆ obsspace_get_nvars_f()

◆ obsspace_get_real32_f()

◆ obsspace_get_real64_f()

◆ obsspace_get_recnum_f()

◆ obsspace_has_f()