Classes
class	LinearModelFactory

class	FullGMRES

class	rotmat

class	SolveMatrixEquation

class	SpectralLMP

class	TestVector3D

class	TriDiagSolve

class	Vector3D

class	ObsErrorCovariance

class	PostTimer

class	Variables

class	InterpolationInterface

class	PseudoModelState4D

class	VerticalLocEV

class	ErrorCovarianceFixture

class	ErrorCovariance

class	Geometry

class	GeometryTestParameters
	Parameters loaded from the input YAML file and used by GeometryFixture. More...

class	GeometryFixture
	Fixture used by tests of the Geometry and GeometryIterator interfaces. More...

class	GeometryIterator

class	GeoVaLs

class	GetValuesFixture

class	GetValues

class	IncrementFixture

class	Increment

class	LinearGetValuesFixture

class	LinearGetValues

class	LinearModelFixture

class	LinearModel

class	LinearObsOperator

class	LinearVariableChangeFixture

class	LinearVariableChange

class	LocalizationFixture

class	Localization

class	Locations

class	ModelFixture

class	Model

class	ModelAuxControlFixture

class	ModelAuxControl

class	ModelAuxCovarianceFixture

class	ModelAuxCovariance

class	ModelAuxIncrementFixture

class	ModelAuxIncrement

class	ObsAuxControl

class	ObsAuxCovariance

class	ObsAuxIncrementFixture

class	ObsAuxIncrement

class	ObsDataVector

class	ObsIterator

class	ObsLocalization

class	ObsOperator

class	ObsSpace

class	ObsTestsFixture

class	ObsVector

class	StateFixture

class	State

class	VariableChangeFixture

class	VariableChange

class	TestParameters

class	Mpi

class	TestEnvironment
	TestEnvironment is a singleton that defines the unit testing enviroment. More...

struct	TestFixture

Typedefs
typedef oops::DiagonalMatrix< Vector3D >	Matrix3D

Functions
	CASE ("test_linearmodelparameterswrapper_valid_name")

	CASE ("test_linearmodelparameterswrapper_invalid_name")

	CASE ("test_linearmodelfactory")

void	test_FullGMRES_FullGMRES ()

	CASE ("assimilation/FullGMRES/FullGMRES")

void	test_b_zero ()

void	test_a_zero ()

void	test_b_gt_a ()

void	test_b_leq_a ()

	CASE ("assimilation/rotmat/b_zero")

	CASE ("assimilation/rotmat/a_zero")

	CASE ("assimilation/rotmat/b_gt_a")

	CASE ("assimilation/rotmat/b_leq_a")

template<typename MINIMIZER >
void	test_SolveMatrixEquation (MINIMIZER minimizer)

	CASE ("assimilation/SolveMatrixEquation/FGMRES")

	CASE ("assimilation/SolveMatrixEquation/GMRESR")

	CASE ("assimilation/SolveMatrixEquation/MINRES")

	CASE ("assimilation/SolveMatrixEquation/IPCG")

	CASE ("assimilation/SolveMatrixEquation/PCG")

	CASE ("assimilation/SolveMatrixEquation/PLanczos")

void	test_SpectralLMP (const eckit::LocalConfiguration &conf)

void	test_Vector3D ()

	CASE ("assimilation/TestVector3D/Vector3D")

void	test_TriDiagSolve ()

void	test_blockTriDiagSolve ()

	CASE ("assimilation/TriDiagSolve/TriDiagSolve")

	CASE ("assimilation/TriDiagSolve/blockTriDiagSolve")

void	test_vars_interface_f (const eckit::Configuration &, oops::Variables &)
	This is intended as a general interface for testing objects in the util namespace from Fortran. More...

template<typename OBS >
void	testConstructor ()
	Tests creation and destruction of ObsErrorCovariances. More...

template<typename OBS >
void	testMultiplies ()
	Tests that \(RR^{-1}dy = dy\) and \(R^{-1}Rdy = dy\). More...

template<typename OBS >
void	testAccessors ()

void	testDefaultCtor ()

void	testBgnEndCtor ()

void	testConfCtor ()

void	testCopyConstructor ()

void	testFortranInterface ()

double	testfunc (double lon, double lat, std::size_t jlev=1, std::size_t nlev=1)
	smooth function for testing interpolation More...

void	testInterpolation ()
	Test C++ interface to interpolation implementations. More...

template<typename MODEL >
void	testPseudoModelState4D ()
	Tests that PseudoModelState4D, run to 0th, 1st, 2nd, etc state produces the same results as the Model specified in yaml. More...

template<typename MODEL >
void	testVerticalLocEV ()

template<typename MODEL >
void	testErrorCovarianceZero ()

template<typename MODEL >
void	testErrorCovarianceInverse ()

template<typename MODEL >
void	testErrorCovarianceSym ()

template<typename MODEL >
void	testCovarianceParametersWrapperValidName ()

template<typename MODEL >
void	testCovarianceParametersWrapperInvalidName ()

template<typename MODEL >
void	testCovarianceFactoryGetMakerNames ()

template<typename MODEL >
void	testBasic ()
	Tests of Geometry::begin/end; GeometryIterator ctor and ==/!= operators. More...

template<typename MODEL >
void	testGetSetLocal ()
	Test of GeometryIterator::operator++, Increment::getLocal and Increment::setLocal. More...

template<typename OBS >
void	testUtils ()

template<typename OBS >
void	testRead ()

template<typename MODEL , typename OBS >
void	testGetValuesConstructor ()
	tests constructor and print method More...

template<typename MODEL , typename OBS >
void	testGetValuesMultiWindow ()

template<typename MODEL , typename OBS >
void	testGetValuesInterpolation ()
	Interpolation test. More...

template<typename MODEL >
void	testIncrementConstructor ()
	tests Increment constructor and print method More...

template<typename MODEL >
void	testIncrementCopyConstructor ()

template<typename MODEL >
void	testIncrementCopyBoolConstructor ()

template<typename MODEL >
void	testIncrementChangeResConstructor ()

template<typename MODEL >
void	testIncrementTriangle ()

template<typename MODEL >
void	testIncrementOpPlusEq ()

template<typename MODEL >
void	testIncrementDotProduct ()

template<typename MODEL >
void	testIncrementZero ()

template<typename MODEL >
void	testIncrementAxpy ()

template<typename MODEL >
void	testIncrementAccum ()

template<typename MODEL >
void	testIncrementSerialize ()

template<typename MODEL >
void	testIncrementAtlas ()

template<typename MODEL >
void	testIncrementDiff ()

template<typename MODEL >
void	testIncrementTime ()

template<typename MODEL >
void	testIncrementSchur ()

template<typename MODEL , typename OBS >
void	testLinearGetValuesConstructor ()
	tests constructor and print method More...

template<typename MODEL , typename OBS >
void	testLinearGetValuesZeroPert ()

template<typename MODEL , typename OBS >
void	testLinearGetValuesLinearity ()

template<typename MODEL , typename OBS >
void	testLinearGetValuesLinearApproximation ()

template<typename MODEL , typename OBS >
void	testLinearGetValuesAdjoint ()

template<typename MODEL >
void	testLinearModelConstructor ()
	tests constructor, timeResolution() method and print method More...

template<typename MODEL >
void	testLinearModelZeroLength ()

template<typename MODEL >
void	testLinearModelZeroPert ()

template<typename MODEL >
void	testLinearModelLinearity ()

template<typename MODEL >
void	testLinearApproximation ()

template<typename MODEL >
void	testLinearModelAdjoint ()

template<typename OBS >
void	testLinearity ()

template<typename OBS >
void	testAdjoint ()

template<typename OBS >
void	testTangentLinear ()

template<typename OBS >
void	testException ()

template<typename MODEL >
void	testLinearVariableChangeZero ()

template<typename MODEL >
void	testLinearVariableChangeAdjoint ()

template<typename MODEL >
void	testLinearVariableChangeInverse ()

template<typename MODEL >
void	testLinearVariableChangeParametersWrapperValidName ()

template<typename MODEL >
void	testLinearVariableChangeParametersWrapperInvalidName ()

template<typename MODEL >
void	testLinearVariableChangeFactoryGetMakerNames ()

template<typename MODEL >
void	testLocalizationRandomize ()

template<typename MODEL >
void	testLocalizationZero ()

template<typename MODEL >
void	testLocalizationMultiply ()

template<typename MODEL >
void	testModelConstructor ()
	tests constructor, timeResolution() method and print method More...

template<typename MODEL >
void	testModelNoForecast ()

template<typename MODEL >
void	testModelForecast ()

template<typename MODEL >
void	testModelReForecast ()

template<typename MODEL >
void	testChangeRes ()

template<typename MODEL >
void	testModelAuxIncrementConstructor ()
	tests constructor and print method More...

template<typename MODEL >
void	testModelAuxIncrementCopyConstructor ()

template<typename MODEL >
void	testModelAuxIncrementChangeRes ()

template<typename MODEL >
void	testModelAuxIncrementTriangle ()

template<typename MODEL >
void	testModelAuxIncrementOpPlusEq ()

template<typename MODEL >
void	testModelAuxIncrementDotProduct ()

template<typename MODEL >
void	testModelAuxIncrementZero ()

template<typename MODEL >
void	testModelAuxIncrementAxpy ()

template<typename OBS >
void	testObsAuxIncrementConstructor ()
	test constructor and print method More...

template<typename OBS >
void	testObsAuxIncrementCopyConstructor ()
	Tests copy-constructor (with option of allocating, but not copying the data) More...

template<typename OBS >
void	testObsAuxIncrementTriangle ()

template<typename OBS >
void	testObsAuxIncrementOpPlusEq ()

template<typename OBS >
void	testObsAuxIncrementDotProduct ()

template<typename OBS >
void	testObsAuxIncrementZero ()

template<typename OBS >
void	testObsAuxIncrementAxpy ()

template<typename OBS >
void	testConstructors ()
	tests constructor and print method More...

template<typename OBS >
void	testObsVector ()

template<typename MODEL , typename OBS >
void	testObsLocalization ()
	Tests ObsLocalization::computeLocalization method. More...

template<typename OBS >
void	testSimulateObs ()

template<typename OBS >
void	testSubwindows ()
	tests that ObsSpaces created on subwindows have the same number obs as ObsSpaces created on the whole window More...

template<typename OBS >
void	testWrappingConstructor ()
	Test the constructor taking a std::unique_ptr<OBS::ObsVector>. More...

template<typename OBS >
void	testNotZero ()

template<typename OBS >
void	testLinearAlgebra ()

template<typename OBS >
void	testReadWrite ()

template<typename OBS >
void	testMask ()
	Tests ObsVector::mask, ObsVector::packEigen and ObsVector::packEigenSize methods. More...

template<typename MODEL >
void	testStateConstructors ()
	tests constructors and print method More...

template<typename MODEL >
void	testStateGeometry ()
	Tests State::geometry() and Geometry copy constructors. More...

template<typename MODEL >
void	testStateAnalyticInitialCondition ()
	Interpolation test. More...

template<typename MODEL >
void	testStateZeroAndAccumul ()
	Tests of zero and accumul. More...

template<typename MODEL >
void	testStateDateTime ()
	validTime and updateTime tests More...

template<typename MODEL >
void	testStateReadWrite ()
	Read and write tests. More...

template<typename MODEL >
void	testVariableChangeInverse ()

template<typename MODEL >
void	testVariableChangeParametersWrapperValidName ()

template<typename MODEL >
void	testVariableChangeParametersWrapperInvalidName ()

template<typename MODEL >
void	testVariableChangeFactoryGetMakerNames ()

template<typename T >
const std::vector< T > &	getTestData (const TestParameters &params)

template<>
const std::vector< util::DateTime > &	getTestData (const TestParameters &params)

template<typename T >
void	testAllGatherv ()

	CASE ("mpi/mpi/defaultCommunicators")

	CASE ("mpi/mpi/allGathervUsingSerialize")

	CASE ("mpi/mpi/allGathervInt")

	CASE ("mpi/mpi/allGathervDateTime")

	CASE ("mpi/mpi/SendReceive")

	CASE ("mpi/mpi/gatherSerializable")

	CASE ("mpi/mpi/gatherDouble")

	CASE ("mpi/mpi/allGatherEigen")

	CASE ("mpi/mpi/exclusiveScan")

Variables
const char *	expectConstructorToThrow = "expect constructor to throw exception with message"

const char *	expectSetTrajectoryToThrow = "expect setTrajectory to throw exception with message"

const char *	expectSimulateObsToThrow = "expect simulateObs to throw exception with message"

const char *	expectSimulateObsTLToThrow = "expect simulateObsTL to throw exception with message"

const char *	expectSimulateObsADToThrow = "expect simulateObsAD to throw exception with message"

Typedef Documentation

◆ Matrix3D

typedef oops::DiagonalMatrix< Vector3D > test::Matrix3D

Definition at line 27 of file test/assimilation/FullGMRES.h.

Function Documentation

◆ CASE() [1/26]

test::CASE ( "assimilation/FullGMRES/FullGMRES" )

Definition at line 56 of file test/assimilation/FullGMRES.h.

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◆ CASE() [2/26]

test::CASE ( "assimilation/rotmat/a_zero" )

Definition at line 79 of file test/assimilation/rotmat.h.

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◆ CASE() [3/26]

test::CASE ( "assimilation/rotmat/b_gt_a" )

Definition at line 83 of file test/assimilation/rotmat.h.

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◆ CASE() [4/26]

test::CASE ( "assimilation/rotmat/b_leq_a" )

Definition at line 87 of file test/assimilation/rotmat.h.

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◆ CASE() [5/26]

test::CASE ( "assimilation/rotmat/b_zero" )

Definition at line 75 of file test/assimilation/rotmat.h.

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◆ CASE() [6/26]

test::CASE ( "assimilation/SolveMatrixEquation/FGMRES" )

Definition at line 59 of file SolveMatrixEquation.h.

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◆ CASE() [7/26]

test::CASE ( "assimilation/SolveMatrixEquation/GMRESR" )

Definition at line 63 of file SolveMatrixEquation.h.

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◆ CASE() [8/26]

test::CASE ( "assimilation/SolveMatrixEquation/IPCG" )

Definition at line 71 of file SolveMatrixEquation.h.

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◆ CASE() [9/26]

test::CASE ( "assimilation/SolveMatrixEquation/MINRES" )

Definition at line 67 of file SolveMatrixEquation.h.

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◆ CASE() [10/26]

test::CASE ( "assimilation/SolveMatrixEquation/PCG" )

Definition at line 75 of file SolveMatrixEquation.h.

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◆ CASE() [11/26]

test::CASE ( "assimilation/SolveMatrixEquation/PLanczos" )

Definition at line 79 of file SolveMatrixEquation.h.

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◆ CASE() [12/26]

test::CASE ( "assimilation/TestVector3D/Vector3D" )

Definition at line 65 of file TestVector3D.h.

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◆ CASE() [13/26]

test::CASE ( "assimilation/TriDiagSolve/blockTriDiagSolve" )

Definition at line 88 of file test/assimilation/TriDiagSolve.h.

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◆ CASE() [14/26]

test::CASE ( "assimilation/TriDiagSolve/TriDiagSolve" )

Definition at line 84 of file test/assimilation/TriDiagSolve.h.

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◆ CASE() [15/26]

test::CASE ( "mpi/mpi/allGatherEigen" )

Definition at line 215 of file test/mpi/mpi.h.

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◆ CASE() [16/26]

test::CASE ( "mpi/mpi/allGathervDateTime" )

Definition at line 121 of file test/mpi/mpi.h.

◆ CASE() [17/26]

test::CASE ( "mpi/mpi/allGathervInt" )

Definition at line 117 of file test/mpi/mpi.h.

◆ CASE() [18/26]

test::CASE ( "mpi/mpi/allGathervUsingSerialize" )

Definition at line 95 of file test/mpi/mpi.h.

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◆ CASE() [19/26]

test::CASE ( "mpi/mpi/defaultCommunicators" )

Definition at line 85 of file test/mpi/mpi.h.

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◆ CASE() [20/26]

test::CASE ( "mpi/mpi/exclusiveScan" )

Definition at line 237 of file test/mpi/mpi.h.

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◆ CASE() [21/26]

test::CASE ( "mpi/mpi/gatherDouble" )

Definition at line 187 of file test/mpi/mpi.h.

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◆ CASE() [22/26]

test::CASE ( "mpi/mpi/gatherSerializable" )

Definition at line 152 of file test/mpi/mpi.h.

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◆ CASE() [23/26]

test::CASE ( "mpi/mpi/SendReceive" )

Definition at line 129 of file test/mpi/mpi.h.

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◆ CASE() [24/26]

test::CASE ( "test_linearmodelfactory" )

Definition at line 37 of file LinearModelFactory.cc.

◆ CASE() [25/26]

test::CASE ( "test_linearmodelparameterswrapper_invalid_name" )

Definition at line 28 of file LinearModelFactory.cc.

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◆ CASE() [26/26]

test::CASE ( "test_linearmodelparameterswrapper_valid_name" )

Definition at line 22 of file LinearModelFactory.cc.

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◆ getTestData() [1/2]

template<typename T >

const std::vector<T>& test::getTestData ( const TestParameters & params )

Definition at line 51 of file test/mpi/mpi.h.

◆ getTestData() [2/2]

template<>

const std::vector< std::string > & test::getTestData ( const TestParameters & params )

Definition at line 51 of file test/mpi/mpi.h.

◆ test_a_zero()

void test::test_a_zero ( )

Definition at line 36 of file test/assimilation/rotmat.h.

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◆ test_b_gt_a()

void test::test_b_gt_a ( )

Definition at line 49 of file test/assimilation/rotmat.h.

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◆ test_b_leq_a()

void test::test_b_leq_a ( )

Definition at line 62 of file test/assimilation/rotmat.h.

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◆ test_b_zero()

void test::test_b_zero ( )

Definition at line 23 of file test/assimilation/rotmat.h.

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◆ test_blockTriDiagSolve()

void test::test_blockTriDiagSolve ( )

Definition at line 40 of file test/assimilation/TriDiagSolve.h.

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◆ test_FullGMRES_FullGMRES()

void test::test_FullGMRES_FullGMRES ( )

Definition at line 29 of file test/assimilation/FullGMRES.h.

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◆ test_SolveMatrixEquation()

template<typename MINIMIZER >

void test::test_SolveMatrixEquation ( MINIMIZER minimizer )

Definition at line 35 of file SolveMatrixEquation.h.

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◆ test_SpectralLMP()

void test::test_SpectralLMP ( const eckit::LocalConfiguration & conf )

Definition at line 30 of file test/assimilation/SpectralLMP.h.

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◆ test_TriDiagSolve()

void test::test_TriDiagSolve ( )

Definition at line 26 of file test/assimilation/TriDiagSolve.h.

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◆ test_vars_interface_f()

void test::test_vars_interface_f	(	const eckit::Configuration &	,
		oops::Variables &
	)

This is intended as a general interface for testing objects in the util namespace from Fortran.

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◆ test_Vector3D()

void test::test_Vector3D ( )

Definition at line 24 of file TestVector3D.h.

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◆ testAccessors()

template<typename OBS >

void test::testAccessors ( )

Tests that the methods obserrors(), inverseVariance update() and save() do what is expected.

Definition at line 105 of file ObsErrorCovariance.h.

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◆ testAdjoint()

template<typename OBS >

void test::testAdjoint ( )

Definition at line 166 of file test/interface/LinearObsOperator.h.

◆ testAllGatherv()

template<typename T >

void test::testAllGatherv ( )

Definition at line 67 of file test/mpi/mpi.h.

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◆ testBasic()

template<typename MODEL >

void test::testBasic ( )

Tests of Geometry::begin/end; GeometryIterator ctor and ==/!= operators.

Tests of ObsSpace::begin/end; ObsIterator ctor, ==/!=/++ operators and dereferencing operator.

testBasic tests the following:

Initialize GeometryIterator to Geometry::begin() and check equality
Initialize GeometryIterator to Geometry::end() and check equality
Check inequality of the two iterators
Print out the begin iterator, to "test" print method

testBasic tests the following:

Initialize ObsIterator to ObsSpace::begin() and check equality
Initialize ObsIterator to ObsSpace::end() and check equality
Check inequality of the two iterators
Print out the begin iterator, to "test" print method
Loop over iterator (test operator++), compute number of iterations, compare with reference
Compare the first two Points with reference.

Definition at line 46 of file test/interface/GeometryIterator.h.

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◆ testBgnEndCtor()

void test::testBgnEndCtor ( )

Definition at line 43 of file test/base/PostTimer.h.

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◆ testChangeRes()

template<typename MODEL >

void test::testChangeRes ( )

Definition at line 92 of file test/interface/ModelAuxControl.h.

◆ testConfCtor()

void test::testConfCtor ( )

Definition at line 74 of file test/base/PostTimer.h.

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◆ testConstructor()

template<typename OBS >

void test::testConstructor ( )

Tests creation and destruction of ObsErrorCovariances.

tests constructor, window accessor methods and prints

test constructor and print method

testing constructor and print method

tests test constructor and print method

tests constructor and print method

Tests test-constructor and print method.

Tests constructor and print method.

Definition at line 32 of file ObsErrorCovariance.h.

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◆ testConstructors()

template<typename OBS >

void test::testConstructors ( )

tests constructor and print method

Definition at line 31 of file test/interface/ObsDataVector.h.

◆ testCopyConstructor()

void test::testCopyConstructor ( )

Definition at line 73 of file test/base/Variables.h.

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◆ testCovarianceFactoryGetMakerNames()

template<typename MODEL >

void test::testCovarianceFactoryGetMakerNames ( )

Definition at line 206 of file test/interface/ErrorCovariance.h.

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◆ testCovarianceParametersWrapperInvalidName()

template<typename MODEL >

void test::testCovarianceParametersWrapperInvalidName ( )

Definition at line 194 of file test/interface/ErrorCovariance.h.

◆ testCovarianceParametersWrapperValidName()

template<typename MODEL >

void test::testCovarianceParametersWrapperValidName ( )

Definition at line 186 of file test/interface/ErrorCovariance.h.

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◆ testDefaultCtor()

void test::testDefaultCtor ( )

Definition at line 26 of file test/base/PostTimer.h.

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◆ testErrorCovarianceInverse()

template<typename MODEL >

void test::testErrorCovarianceInverse ( )

Definition at line 132 of file test/interface/ErrorCovariance.h.

◆ testErrorCovarianceSym()

template<typename MODEL >

void test::testErrorCovarianceSym ( )

Definition at line 160 of file test/interface/ErrorCovariance.h.

◆ testErrorCovarianceZero()

template<typename MODEL >

void test::testErrorCovarianceZero ( )

Definition at line 99 of file test/interface/ErrorCovariance.h.

◆ testException()

template<typename OBS >

void test::testException ( )

Definition at line 374 of file test/interface/LinearObsOperator.h.

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◆ testFortranInterface()

void test::testFortranInterface ( )

Definition at line 89 of file test/base/Variables.h.

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◆ testfunc()

double test::testfunc	(	double	lon,
		double	lat,
		std::size_t	jlev = `1`,
		std::size_t	nlev = `1`
	)

smooth function for testing interpolation

Definition at line 52 of file InterpolationInterface.h.

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◆ testGetSetLocal()

template<typename MODEL >

void test::testGetSetLocal ( )

Test of GeometryIterator::operator++, Increment::getLocal and Increment::setLocal.

testGetSetLocal tests the following:

Initialize dx1 to non-zero random values, initialize dx2 to zero. Loop through gridpoints using GeometryIterator operator++, assign dx2 to dx1 gridpoint by gridpoint using get/setLocal. Check that the two increments are the same in the end.

Definition at line 76 of file test/interface/GeometryIterator.h.

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◆ testGetValuesConstructor()

template<typename MODEL , typename OBS >

void test::testGetValuesConstructor ( )

tests constructor and print method

Definition at line 124 of file test/interface/GetValues.h.

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◆ testGetValuesInterpolation()

template<typename MODEL , typename OBS >

void test::testGetValuesInterpolation ( )

Interpolation test.

testGetValuesInterpolation() tests the creation of an analytic state for a given model. The conceptual steps are as follows:

Initialize the JEDI State object based on idealized analytic formulae
Interpolate the State variables onto selected "observation" locations using the getValues() method of the State object. The result is placed in a JEDI GeoVaLs object
Compute the correct solution by applying the analytic formulae directly at the observation locations.
Assess the accuracy of the interpolation by comparing the interpolated values from Step 2 with the exact values from Step 3

The interpolated state values are compared to the analytic solution for a series of locations which includes values optionally specified by the user in the "state test" section of the config file in addition to a randomly-generated list of nrandom random locations. nrandom is also specified by the user in the "state test" section of the config file, as is the (nondimensional) tolerence level (interpolation tolerance) to be used for the tests.

Relevant parameters in the **State* section of the config file include

norm-gen Normalization test for the generated State
interpolation tolerance tolerance for the interpolation test

Date: April, 2018: M. Miesch (JCSDA) adapted a preliminary version in the feature/interp branch

Warning: Since this model compares the interpolated state values to an exact analytic solution, it requires that the "analytic_init" option be implemented in the model and selected in the "state.state generate" section of the config file.

Definition at line 202 of file test/interface/GetValues.h.

◆ testGetValuesMultiWindow()

template<typename MODEL , typename OBS >

void test::testGetValuesMultiWindow ( )

Definition at line 139 of file test/interface/GetValues.h.

◆ testIncrementAccum()

template<typename MODEL >

void test::testIncrementAccum ( )

Definition at line 273 of file test/interface/Increment.h.

◆ testIncrementAtlas()

template<typename MODEL >

void test::testIncrementAtlas ( )

Definition at line 359 of file test/interface/Increment.h.

◆ testIncrementAxpy()

template<typename MODEL >

void test::testIncrementAxpy ( )

Definition at line 253 of file test/interface/Increment.h.

◆ testIncrementChangeResConstructor()

template<typename MODEL >

void test::testIncrementChangeResConstructor ( )

Definition at line 151 of file test/interface/Increment.h.

◆ testIncrementConstructor()

template<typename MODEL >

void test::testIncrementConstructor ( )

tests Increment constructor and print method

Definition at line 100 of file test/interface/Increment.h.

◆ testIncrementCopyBoolConstructor()

template<typename MODEL >

void test::testIncrementCopyBoolConstructor ( )

Definition at line 132 of file test/interface/Increment.h.

◆ testIncrementCopyConstructor()

template<typename MODEL >

void test::testIncrementCopyConstructor ( )

Definition at line 112 of file test/interface/Increment.h.

◆ testIncrementDiff()

template<typename MODEL >

void test::testIncrementDiff ( )

Definition at line 384 of file test/interface/Increment.h.

◆ testIncrementDotProduct()

template<typename MODEL >

void test::testIncrementDotProduct ( )

Definition at line 208 of file test/interface/Increment.h.

◆ testIncrementOpPlusEq()

template<typename MODEL >

void test::testIncrementOpPlusEq ( )

Definition at line 190 of file test/interface/Increment.h.

◆ testIncrementSchur()

template<typename MODEL >

void test::testIncrementSchur ( )

Definition at line 447 of file test/interface/Increment.h.

◆ testIncrementSerialize()

template<typename MODEL >

void test::testIncrementSerialize ( )

Definition at line 323 of file test/interface/Increment.h.

◆ testIncrementTime()

template<typename MODEL >

void test::testIncrementTime ( )

Definition at line 428 of file test/interface/Increment.h.

◆ testIncrementTriangle()

template<typename MODEL >

void test::testIncrementTriangle ( )

Definition at line 165 of file test/interface/Increment.h.

◆ testIncrementZero()

template<typename MODEL >

void test::testIncrementZero ( )

Definition at line 226 of file test/interface/Increment.h.

◆ testInterpolation()

void test::testInterpolation ( )

Test C++ interface to interpolation implementations.

Now test the adjoint. But, skip this test for interpolators like atlas that have not yet implemented the adjoint

Definition at line 64 of file InterpolationInterface.h.

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◆ testLinearAlgebra()

template<typename OBS >

void test::testLinearAlgebra ( )

Definition at line 129 of file test/interface/ObsVector.h.

◆ testLinearApproximation()

template<typename MODEL >

void test::testLinearApproximation ( )

Definition at line 260 of file test/interface/LinearModel.h.

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◆ testLinearGetValuesAdjoint()

template<typename MODEL , typename OBS >

void test::testLinearGetValuesAdjoint ( )

Definition at line 301 of file test/interface/LinearGetValues.h.

◆ testLinearGetValuesConstructor()

template<typename MODEL , typename OBS >

void test::testLinearGetValuesConstructor ( )

tests constructor and print method

Definition at line 161 of file test/interface/LinearGetValues.h.

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◆ testLinearGetValuesLinearApproximation()

template<typename MODEL , typename OBS >

void test::testLinearGetValuesLinearApproximation ( )

Definition at line 239 of file test/interface/LinearGetValues.h.

◆ testLinearGetValuesLinearity()

template<typename MODEL , typename OBS >

void test::testLinearGetValuesLinearity ( )

Definition at line 207 of file test/interface/LinearGetValues.h.

◆ testLinearGetValuesZeroPert()

template<typename MODEL , typename OBS >

void test::testLinearGetValuesZeroPert ( )

Definition at line 182 of file test/interface/LinearGetValues.h.

◆ testLinearity()

template<typename OBS >

void test::testLinearity ( )

Definition at line 75 of file test/interface/LinearObsOperator.h.

◆ testLinearModelAdjoint()

template<typename MODEL >

void test::testLinearModelAdjoint ( )

Definition at line 319 of file test/interface/LinearModel.h.

◆ testLinearModelConstructor()

template<typename MODEL >

void test::testLinearModelConstructor ( )

tests constructor, timeResolution() method and print method

Definition at line 153 of file test/interface/LinearModel.h.

◆ testLinearModelLinearity()

template<typename MODEL >

void test::testLinearModelLinearity ( )

Definition at line 225 of file test/interface/LinearModel.h.

◆ testLinearModelZeroLength()

template<typename MODEL >

void test::testLinearModelZeroLength ( )

Definition at line 163 of file test/interface/LinearModel.h.

◆ testLinearModelZeroPert()

template<typename MODEL >

void test::testLinearModelZeroPert ( )

Definition at line 195 of file test/interface/LinearModel.h.

◆ testLinearVariableChangeAdjoint()

template<typename MODEL >

void test::testLinearVariableChangeAdjoint ( )

Definition at line 137 of file test/interface/LinearVariableChange.h.

◆ testLinearVariableChangeFactoryGetMakerNames()

template<typename MODEL >

void test::testLinearVariableChangeFactoryGetMakerNames ( )

Definition at line 270 of file test/interface/LinearVariableChange.h.

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◆ testLinearVariableChangeInverse()

template<typename MODEL >

void test::testLinearVariableChangeInverse ( )

Definition at line 203 of file test/interface/LinearVariableChange.h.

◆ testLinearVariableChangeParametersWrapperInvalidName()

template<typename MODEL >

void test::testLinearVariableChangeParametersWrapperInvalidName ( )

Definition at line 258 of file test/interface/LinearVariableChange.h.

◆ testLinearVariableChangeParametersWrapperValidName()

template<typename MODEL >

void test::testLinearVariableChangeParametersWrapperValidName ( )

Definition at line 248 of file test/interface/LinearVariableChange.h.

◆ testLinearVariableChangeZero()

template<typename MODEL >

void test::testLinearVariableChangeZero ( )

Definition at line 90 of file test/interface/LinearVariableChange.h.

◆ testLocalizationMultiply()

template<typename MODEL >

void test::testLocalizationMultiply ( )

Definition at line 107 of file test/interface/Localization.h.

◆ testLocalizationRandomize()

template<typename MODEL >

void test::testLocalizationRandomize ( )

Definition at line 82 of file test/interface/Localization.h.

◆ testLocalizationZero()

template<typename MODEL >

void test::testLocalizationZero ( )

Definition at line 94 of file test/interface/Localization.h.

◆ testMask()

template<typename OBS >

void test::testMask ( )

Tests ObsVector::mask, ObsVector::packEigen and ObsVector::packEigenSize methods.

Tests that:

mask of all zeros (nothing to mask) applied to ObsVector doesn't change its size and content;
mask of either all ones (if "mask variable" isn't specified in yaml), or from the file applied to ObsVector changes its size.
linear algebra operations with ObsVector that were masked out produce ObsVectors that have the same number of obs masked out.
size returned by packEigenSize is consistent with size of Eigen Vector returned by packEigen, and is the same as reference value for each MPI task.

apply empty mask, check that vector is the same

apply non-empty mask, check number of observations

by default (else statement below), apply mask that masks out everything

if mask variable is available, apply mask from file and read reference number of masked obs

if mask variable is unavailable, apply mask with all ones

Test that various linear algebra operations with masked out ObsVector produce masked out ObsVector Test invert()

Test *=(float)

Test +=(ObsVector)

Test -=(ObsVector)

Test *=(ObsVector)

Test /=(ObsVector)

Test axpy

test packEigen

Definition at line 201 of file test/interface/ObsVector.h.

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◆ testModelAuxIncrementAxpy()

template<typename MODEL >

void test::testModelAuxIncrementAxpy ( )

Definition at line 199 of file test/interface/ModelAuxIncrement.h.

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◆ testModelAuxIncrementChangeRes()

template<typename MODEL >

void test::testModelAuxIncrementChangeRes ( )

Definition at line 105 of file test/interface/ModelAuxIncrement.h.

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◆ testModelAuxIncrementConstructor()

template<typename MODEL >

void test::testModelAuxIncrementConstructor ( )

tests constructor and print method

Definition at line 76 of file test/interface/ModelAuxIncrement.h.

◆ testModelAuxIncrementCopyConstructor()

template<typename MODEL >

void test::testModelAuxIncrementCopyConstructor ( )

Definition at line 87 of file test/interface/ModelAuxIncrement.h.

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◆ testModelAuxIncrementDotProduct()

template<typename MODEL >

void test::testModelAuxIncrementDotProduct ( )

Definition at line 166 of file test/interface/ModelAuxIncrement.h.

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◆ testModelAuxIncrementOpPlusEq()

template<typename MODEL >

void test::testModelAuxIncrementOpPlusEq ( )

Definition at line 148 of file test/interface/ModelAuxIncrement.h.

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◆ testModelAuxIncrementTriangle()

template<typename MODEL >

void test::testModelAuxIncrementTriangle ( )

Definition at line 123 of file test/interface/ModelAuxIncrement.h.

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◆ testModelAuxIncrementZero()

template<typename MODEL >

void test::testModelAuxIncrementZero ( )

Definition at line 184 of file test/interface/ModelAuxIncrement.h.

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◆ testModelConstructor()

template<typename MODEL >

void test::testModelConstructor ( )

tests constructor, timeResolution() method and print method

Definition at line 95 of file test/interface/Model.h.

◆ testModelForecast()

template<typename MODEL >

void test::testModelForecast ( )

Definition at line 127 of file test/interface/Model.h.

◆ testModelNoForecast()

template<typename MODEL >

void test::testModelNoForecast ( )

Definition at line 105 of file test/interface/Model.h.

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◆ testModelReForecast()

template<typename MODEL >

void test::testModelReForecast ( )

Definition at line 157 of file test/interface/Model.h.

◆ testMultiplies()

template<typename OBS >

void test::testMultiplies ( )

Tests that \(R*R^{-1}*dy = dy\) and \(R^{-1}*R*dy = dy\).

Definition at line 57 of file ObsErrorCovariance.h.

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◆ testNotZero()

template<typename OBS >

void test::testNotZero ( )

Test that:

dot_product of a random vector with self is non-zero
dot_product of a random vector with a zero vector is zero
dot_product of a zero vector with self is zero
dot_product of a vector of ones with self is equal to nobs

Definition at line 103 of file test/interface/ObsVector.h.

◆ testObsAuxIncrementAxpy()

template<typename OBS >

void test::testObsAuxIncrementAxpy ( )

Definition at line 217 of file test/interface/ObsAuxIncrement.h.

◆ testObsAuxIncrementConstructor()

template<typename OBS >

void test::testObsAuxIncrementConstructor ( )

test constructor and print method

Definition at line 70 of file test/interface/ObsAuxIncrement.h.

◆ testObsAuxIncrementCopyConstructor()

template<typename OBS >

void test::testObsAuxIncrementCopyConstructor ( )

Tests copy-constructor (with option of allocating, but not copying the data)

Test that creating new increment without copying data works

Test that creating new increment with copying data works

Test that the copy is equal to the original

Definition at line 86 of file test/interface/ObsAuxIncrement.h.

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◆ testObsAuxIncrementDotProduct()

template<typename OBS >

void test::testObsAuxIncrementDotProduct ( )

Definition at line 172 of file test/interface/ObsAuxIncrement.h.

◆ testObsAuxIncrementOpPlusEq()

template<typename OBS >

void test::testObsAuxIncrementOpPlusEq ( )

Definition at line 148 of file test/interface/ObsAuxIncrement.h.

◆ testObsAuxIncrementTriangle()

template<typename OBS >

void test::testObsAuxIncrementTriangle ( )

Definition at line 115 of file test/interface/ObsAuxIncrement.h.

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◆ testObsAuxIncrementZero()

template<typename OBS >

void test::testObsAuxIncrementZero ( )

Definition at line 196 of file test/interface/ObsAuxIncrement.h.

◆ testObsLocalization()

template<typename MODEL , typename OBS >

void test::testObsLocalization ( )

Tests ObsLocalization::computeLocalization method.

Tests that for obs localization around specified in yaml Geometry points:

number of local obs matches reference ("reference local nobs")
obs localization applied to a vector of ones makes rms(obsvec) < 1 or doesn't change the vector (depending on the "localization reduces values" option) Reference gridpoints are specified in yaml as "reference gridpoints.lons" and "reference gridpoints.lats". They don't have to be exactly equal to the lon/lat of the Geometry gridpoints, but should be no further than 1.e-5 distance away.

Definition at line 41 of file test/interface/ObsLocalization.h.

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◆ testObsVector()

template<typename OBS >

void test::testObsVector ( )

Definition at line 56 of file test/interface/ObsDataVector.h.

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◆ testPseudoModelState4D()

template<typename MODEL >

void test::testPseudoModelState4D ( )

Tests that PseudoModelState4D, run to 0th, 1st, 2nd, etc state produces the same results as the Model specified in yaml.

Definition at line 36 of file test/generic/PseudoModelState4D.h.

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◆ testRead()

template<typename OBS >

void test::testRead ( )

Definition at line 131 of file test/interface/GeoVaLs.h.

◆ testReadWrite()

template<typename OBS >

void test::testReadWrite ( )

Definition at line 174 of file test/interface/ObsVector.h.

◆ testSimulateObs()

template<typename OBS >

void test::testSimulateObs ( )

Definition at line 67 of file test/interface/ObsOperator.h.

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◆ testStateAnalyticInitialCondition()

template<typename MODEL >

void test::testStateAnalyticInitialCondition ( )

Interpolation test.

testStateAnalyticInitialCondition() tests the creation of an analytic state for a given model. The conceptual steps are as follows:

Initialize the JEDI State object based on idealized analytic formulae
Compare norm to precomputed norm

Relevant parameters in the **State* section of the config file include

norm-gen Normalization test for the generated State

Date: April, 2018: M. Miesch (JCSDA) adapted a preliminary version in the feature/interp branch

Warning: Since this model compares the interpolated state values to an exact analytic solution, it requires that the "analytic_init" option be implemented in the model and selected in the "state.state generate" section of the config file.

Definition at line 167 of file test/interface/State.h.

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◆ testStateConstructors()

template<typename MODEL >

void test::testStateConstructors ( )

tests constructors and print method

Definition at line 73 of file test/interface/State.h.

◆ testStateDateTime()

template<typename MODEL >

void test::testStateDateTime ( )

validTime and updateTime tests

testStateDateTime() tests the validTime and updateTime routines.

This is performed by updating the initial state time in two ways:

two lots of one hour,
one lot of two hours.

validTime is then used in the comparison of the two times obtained.

Definition at line 243 of file test/interface/State.h.

◆ testStateGeometry()

template<typename MODEL >

void test::testStateGeometry ( )

Tests State::geometry() and Geometry copy constructors.

Definition at line 125 of file test/interface/State.h.

◆ testStateReadWrite()

template<typename MODEL >

void test::testStateReadWrite ( )

Read and write tests.

testStateReadWrite() tests reading and writing model state files.

The tests are as follows:

Read an input file and check it sets a state correctly.
Write an output file and read it in again, checking the states are the same.

Definition at line 281 of file test/interface/State.h.

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◆ testStateZeroAndAccumul()

template<typename MODEL >

void test::testStateZeroAndAccumul ( )

Tests of zero and accumul.

testStateZeroAndAccumul tests the folllowing:

Call State.zero() and check the resulting norm is indeed zero.
Call State.accumul(), passing a multiplication factor and a second State as arguments, and verify that the resulting norm is as expected. Several multiplication factors are tested.

Definition at line 205 of file test/interface/State.h.

◆ testSubwindows()

template<typename OBS >

void test::testSubwindows ( )

tests that ObsSpaces created on subwindows have the same number obs as ObsSpaces created on the whole window

Create ObsVectors for each of the ObsSpaces, to compare nobs

Definition at line 49 of file test/interface/ObsSpace.h.

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◆ testTangentLinear()

template<typename OBS >

void test::testTangentLinear ( )

Definition at line 260 of file test/interface/LinearObsOperator.h.

◆ testUtils()

template<typename OBS >

void test::testUtils ( )

Definition at line 54 of file test/interface/GeoVaLs.h.

◆ testVariableChangeFactoryGetMakerNames()

template<typename MODEL >

void test::testVariableChangeFactoryGetMakerNames ( )

Definition at line 148 of file test/interface/VariableChange.h.

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◆ testVariableChangeInverse()

template<typename MODEL >

void test::testVariableChangeInverse ( )

Definition at line 73 of file test/interface/VariableChange.h.

◆ testVariableChangeParametersWrapperInvalidName()

template<typename MODEL >

void test::testVariableChangeParametersWrapperInvalidName ( )

Definition at line 136 of file test/interface/VariableChange.h.

◆ testVariableChangeParametersWrapperValidName()

template<typename MODEL >

void test::testVariableChangeParametersWrapperValidName ( )

Definition at line 126 of file test/interface/VariableChange.h.

◆ testVerticalLocEV()

template<typename MODEL >

void test::testVerticalLocEV ( )

Definition at line 42 of file test/generic/VerticalLocEV.h.

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◆ testWrappingConstructor()

template<typename OBS >

void test::testWrappingConstructor ( )

Test the constructor taking a std::unique_ptr<OBS::ObsVector>.

Definition at line 77 of file test/interface/ObsVector.h.

Variable Documentation

◆ expectConstructorToThrow

const char * test::expectConstructorToThrow = "expect constructor to throw exception with message"

Definition at line 35 of file test/interface/LinearObsOperator.h.

◆ expectSetTrajectoryToThrow

const char* test::expectSetTrajectoryToThrow = "expect setTrajectory to throw exception with message"

Definition at line 36 of file test/interface/LinearObsOperator.h.

◆ expectSimulateObsADToThrow

const char* test::expectSimulateObsADToThrow = "expect simulateObsAD to throw exception with message"

Definition at line 39 of file test/interface/LinearObsOperator.h.

◆ expectSimulateObsTLToThrow

const char* test::expectSimulateObsTLToThrow = "expect simulateObsTL to throw exception with message"

Definition at line 38 of file test/interface/LinearObsOperator.h.

◆ expectSimulateObsToThrow

const char * test::expectSimulateObsToThrow = "expect simulateObs to throw exception with message"

Definition at line 37 of file test/interface/LinearObsOperator.h.

Classes

Typedefs

Functions

Variables

Typedef Documentation

◆ Matrix3D

Function Documentation

◆ CASE() [1/26]

◆ CASE() [2/26]

◆ CASE() [3/26]

◆ CASE() [4/26]

◆ CASE() [5/26]

◆ CASE() [6/26]

◆ CASE() [7/26]

◆ CASE() [8/26]

◆ CASE() [9/26]

◆ CASE() [10/26]

◆ CASE() [11/26]

◆ CASE() [12/26]

◆ CASE() [13/26]

◆ CASE() [14/26]

◆ CASE() [15/26]

◆ CASE() [16/26]

◆ CASE() [17/26]

◆ CASE() [18/26]

◆ CASE() [19/26]

◆ CASE() [20/26]

◆ CASE() [21/26]

◆ CASE() [22/26]

◆ CASE() [23/26]

◆ CASE() [24/26]

◆ CASE() [25/26]

◆ CASE() [26/26]

◆ getTestData() [1/2]

◆ getTestData() [2/2]

◆ test_a_zero()

◆ test_b_gt_a()

◆ test_b_leq_a()

◆ test_b_zero()

◆ test_blockTriDiagSolve()

◆ test_FullGMRES_FullGMRES()

◆ test_SolveMatrixEquation()

◆ test_SpectralLMP()

◆ test_TriDiagSolve()

◆ test_vars_interface_f()

◆ test_Vector3D()

◆ testAccessors()

◆ testAdjoint()

◆ testAllGatherv()

◆ testBasic()

◆ testBgnEndCtor()

◆ testChangeRes()

◆ testConfCtor()

◆ testConstructor()

◆ testConstructors()

◆ testCopyConstructor()

◆ testCovarianceFactoryGetMakerNames()

◆ testCovarianceParametersWrapperInvalidName()

◆ testCovarianceParametersWrapperValidName()

◆ testDefaultCtor()

◆ testErrorCovarianceInverse()

◆ testErrorCovarianceSym()

◆ testErrorCovarianceZero()

◆ testException()

◆ testFortranInterface()

◆ testfunc()

◆ testGetSetLocal()

◆ testGetValuesConstructor()

◆ testGetValuesInterpolation()

◆ testGetValuesMultiWindow()

◆ testIncrementAccum()

◆ testIncrementAtlas()

◆ testIncrementAxpy()

◆ testIncrementChangeResConstructor()

◆ testIncrementConstructor()

◆ testIncrementCopyBoolConstructor()

◆ testIncrementCopyConstructor()

◆ testIncrementDiff()

◆ testIncrementDotProduct()

◆ testIncrementOpPlusEq()