ObsChlEuzIntegr.cc

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/*
 * (C) Copyright 2020-2020 UCAR
 *
 * This software is licensed under the terms of the Apache Licence Version 2.0
 * which can be obtained at http://www.apache.org/licenses/LICENSE-2.0. 
 */
 
#include "ufo/marine/chleuzintegr/ObsChlEuzIntegr.h"
 
#include <ostream>
#include <string>
#include <vector>
 
#include "ioda/ObsVector.h"
 
#include "oops/base/Variables.h"
 
#include "ufo/GeoVaLs.h"
#include "ufo/ObsDiagnostics.h"
#include "ufo/utils/Constants.h"
 
namespace ufo {
 
// -----------------------------------------------------------------------------
static ObsOperatorMaker<ObsChlEuzIntegr> makerChlEuzIntegr_("Chlorophyll Ocean Color");
// -----------------------------------------------------------------------------
 
ObsChlEuzIntegr::ObsChlEuzIntegr(const ioda::ObsSpace & odb,
                                 const eckit::Configuration & config)
  : ObsOperatorBase(odb, config), varin_()
{
  const std::vector<std::string> vvin{"mass_concentration_of_chlorophyll_in_sea_water",
                                      "sea_water_cell_thickness"};
  varin_.reset(new oops::Variables(vvin));
  oops::Log::trace() << "ObsChlEuzIntegr created." << std::endl;
}
 
// -----------------------------------------------------------------------------
 
ObsChlEuzIntegr::~ObsChlEuzIntegr() {
  oops::Log::trace() << "ObsChlEuzIntegr destructed" << std::endl;
}
 
// -----------------------------------------------------------------------------
void ObsChlEuzIntegr::simulateObs(const GeoVaLs & gv, ioda::ObsVector & ovec,
                                  ObsDiagnostics &) const {
  int nlocs = ovec.size();
  int nlevs = gv.nlevs("mass_concentration_of_chlorophyll_in_sea_water");
 
  // common vectors storage
  std::vector <double> tmp(nlocs, 0.0);
 
  // Retrieve the chlorophyll and cell thickness
  std::vector<std::vector<double>> chl;
  std::vector<std::vector<double>> h;
  for ( std::size_t k = 0; k < nlevs; ++k ) {
    gv.get(tmp, "sea_water_cell_thickness", k+1);
    h.push_back(tmp);
    gv.get(tmp, "mass_concentration_of_chlorophyll_in_sea_water", k+1);
    chl.push_back(tmp);
  }
 
  // Calculate mean chlorophyll averaged over euphotic layer (euz_mod)
  for ( std::size_t i = 0; i < nlocs; ++i ) {
    double euz = Constants::euzc_0 * pow(chl[0][i], Constants::euzc_1);
    double euz_mod = 0.0;
    int elev = 0;
    for ( std::size_t k = 0; k < nlevs; ++k ) {
      if (euz_mod < euz) {
        euz_mod += h[k][i];
        elev++;
      }
    }
    ovec[i] = 0.0;
    for ( std::size_t k = 0; k < elev; ++k ) {
      ovec[i] += chl[k][i] * h[k][i] / euz_mod;
    }
  }
  oops::Log::trace() << "ObsChlEuzIntegr: observation operator run" << std::endl;
}
 
// -----------------------------------------------------------------------------
 
void ObsChlEuzIntegr::print(std::ostream & os) const {
  os << "Chlorophyll Ocean Color obs operator";
}
 
// -----------------------------------------------------------------------------
 
}  // namespace ufo