BackgroundCheck.cc

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/*
 * (C) Copyright 2020-2020 UCAR
 *
 * This software is licensed under the terms of the Apache Licence Version 2.0
 * which can be obtained at http://www.apache.org/licenses/LICENSE-2.0.
 */
 
#include "lorenz95/BackgroundCheck.h"
 
#include <vector>
 
#include "lorenz95/L95Traits.h"
#include "oops/interface/ObsFilter.h"
 
// -----------------------------------------------------------------------------
namespace lorenz95 {
// -----------------------------------------------------------------------------
static oops::FilterMaker<L95ObsTraits,
       oops::ObsFilter<L95ObsTraits, BackgroundCheck> > makerBackgroundCheck_("Background Check");
 
// -----------------------------------------------------------------------------
BackgroundCheck::BackgroundCheck(const ObsTableView & obsdb, const eckit::Configuration & conf,
           std::shared_ptr<ObsData1D<int> > qcflags, std::shared_ptr<ObsData1D<float> > obserr)
  : obsdb_(obsdb), qcflags_(qcflags), obserr_(obserr), novars_()
{
  options_.deserialize(conf);
}
 
// -----------------------------------------------------------------------------
void BackgroundCheck::postFilter(const ObsVec1D & hofx, const ObsDiags1D &) const {
  std::vector<float> yobs;
  obsdb_.getdb("ObsValue", yobs);
  for (size_t jj = 0; jj < yobs.size(); ++jj) {
    if (std::abs(yobs[jj] - hofx[jj]) > options_.threshold) {
      // inflate obs error variance
      if (options_.inflation.value() != boost::none) {
        (*obserr_)[jj] *= *options_.inflation.value();
      // or reject observation
      } else {
        (*qcflags_)[jj] = 1;
      }
    }
  }
}
 
// -----------------------------------------------------------------------------
void BackgroundCheck::print(std::ostream & os) const {
  os << "L95 Background check with absolute threshold " << options_.threshold << std::endl;
}
 
}  // namespace lorenz95