Namespaces
	test

Classes
struct	DistanceTypeParameterTraitsHelper

class	Distribution
	class for distributing obs across multiple process elements More...

class	DistributionFactory
	Factory class to instantiate objects of Distribution subclasses. More...

class	FrameDataMap
	frame data map More...

class	InefficientDistribution
	Inefficient distribution. More...

class	IodaIO
	File access class for IODA. More...

class	IodaIOfactory
	Factory class to instantiate objects of IodaIO subclasses. More...

struct	IodaTrait

class	LocalObsSpaceParameters
	Options controlling local observations subsetting. More...

class	NetcdfIO
	Implementation of IodaIO for netcdf. More...

class	ObsData
	Observation Data. More...

class	ObsDataVector
	ObsDataVector<DATATYPE> handles vectors of data of type DATATYPE in observation space. More...

class	ObsGroupingMap

class	ObsLocGC99
	ObsLocalization matrix for IODA model. More...

class	ObsSpace
	Observation Space View. More...

class	ObsSpaceContainer
	Obs container class for IODA. More...

class	ObsVector
	ObsVector class to handle vectors in observation space for IODA. More...

class	RoundRobin
	Round robin distribution. More...

struct	SearchMethodParameterTraitsHelper

class	TimeIodaIO

Typedefs
template<typename DATATYPE >
using	ObsDataRow = std::vector< DATATYPE >

Enumerations
enum	DistanceType { DistanceType::GEODESIC, DistanceType::CARTESIAN }

enum	SearchMethod { SearchMethod::BRUTEFORCE, SearchMethod::KDTREE }

enum	ObsDtype { ObsDtype::None, ObsDtype::Float, ObsDtype::Integer, ObsDtype::String }

Functions
std::vector< std::size_t >	CharShapeFromStringVector (const std::vector< std::string > &StringVector)

std::vector< std::string >	CharArrayToStringVector (const char *CharData, const std::vector< std::size_t > &CharShape)

void	StringVectorToCharArray (const std::vector< std::string > &StringVector, const std::vector< std::size_t > &CharShape, char *CharData)

std::string	TypeIdName (const std::type_info &TypeId)

std::size_t	FindMaxStringLength (const std::vector< std::string > &StringVector)

template<typename FromType , typename ToType >
void	ConvertVarType (const std::vector< FromType > &FromVar, std::vector< ToType > &ToVar)

const ObsSpace *	obsspace_construct_f (const eckit::Configuration conf, const util::DateTime begin, const util::DateTime *end)

void	obsspace_destruct_f (ObsSpace *obss)

void	obsspace_obsname_f (const ObsSpace &obss, size_t &lcname, char *cname)

const oops::Variables *	obsspace_obsvariables_f (const ObsSpace &obss)

std::size_t	obsspace_get_gnlocs_f (const ObsSpace &obss)

std::size_t	obsspace_get_nlocs_f (const ObsSpace &obss)

std::size_t	obsspace_get_nrecs_f (const ObsSpace &obss)

std::size_t	obsspace_get_nvars_f (const ObsSpace &obss)

void	obsspace_get_comm_f (const ObsSpace &obss, int &lcname, char *cname)

void	obsspace_get_recnum_f (const ObsSpace &obss, const std::size_t &length, std::size_t *recnum)

void	obsspace_get_index_f (const ObsSpace &obss, const std::size_t &length, std::size_t *index)

bool	obsspace_has_f (const ObsSpace &obss, const char group, const char vname)

void	obsspace_get_int32_f (const ObsSpace &obss, const char group, const char vname, const std::size_t &length, int32_t *vec)

void	obsspace_get_int64_f (const ObsSpace &obss, const char group, const char vname, const std::size_t &length, int64_t *vec)

void	obsspace_get_real32_f (const ObsSpace &obss, const char group, const char vname, const std::size_t &length, float *vec)

void	obsspace_get_real64_f (const ObsSpace &obss, const char group, const char vname, const std::size_t &length, double *vec)

void	obsspace_get_datetime_f (const ObsSpace &obss, const char group, const char vname, const std::size_t &length, int32_t date, int32_t time)

void	obsspace_put_int32_f (ObsSpace &obss, const char group, const char vname, const std::size_t &length, int32_t *vec)

void	obsspace_put_int64_f (ObsSpace &obss, const char group, const char vname, const std::size_t &length, int64_t *vec)

void	obsspace_put_real32_f (ObsSpace &obss, const char group, const char vname, const std::size_t &length, float *vec)

void	obsspace_put_real64_f (ObsSpace &obss, const char group, const char vname, const std::size_t &length, double *vec)

template<typename MODEL >
void	instantiateObsLocFactory ()

Variables
const std::size_t	IODAIO_DEFAULT_FRAME_SIZE = 10000
	Constant to be used for default maximum frame size. More...

Typedef Documentation

◆ ObsDataRow

template<typename DATATYPE >

using ioda::ObsDataRow = typedef std::vector<DATATYPE>

Definition at line 34 of file ObsDataVector.h.

Enumeration Type Documentation

◆ DistanceType

enum ioda::DistanceType

strong

Enumerator
GEODESIC
CARTESIAN

Definition at line 30 of file LocalObsSpaceParameters.h.

◆ ObsDtype

enum ioda::ObsDtype

strong

Enumerator
None
Float
Integer
String

Definition at line 63 of file ObsData.h.

◆ SearchMethod

enum ioda::SearchMethod

strong

Enumerator
BRUTEFORCE
KDTREE

Definition at line 34 of file LocalObsSpaceParameters.h.

Function Documentation

◆ CharArrayToStringVector()

std::vector< std::string > ioda::CharArrayToStringVector	(	const char *	CharData,
		const std::vector< std::size_t > &	CharShape
	)

Definition at line 33 of file IodaUtils.cc.

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◆ CharShapeFromStringVector()

std::vector< std::size_t > ioda::CharShapeFromStringVector ( const std::vector< std::string > & StringVector )

Definition at line 17 of file IodaUtils.cc.

◆ ConvertVarType()

template<typename FromType , typename ToType >

void ioda::ConvertVarType	(	const std::vector< FromType > &	FromVar,
		std::vector< ToType > &	ToVar
	)

This method will perform numeric data type conversions. The caller needs to allocate memory for the converted data (ToVar). This method is aware of the IODA missing values and will convert these appropriately. For example when converting double to float, all double missing values will be replaced with float missing values during the conversion.

Parameters

[in]	FromVar	Vector of variable we are converting from
[out]	ToVar	Vector of variable we are converting to
[in]	VarSize	Total number of elements in FromVar and ToVar.

Definition at line 48 of file IodaUtils.h.

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◆ FindMaxStringLength()

std::size_t ioda::FindMaxStringLength ( const std::vector< std::string > & StringVector )

Definition at line 106 of file IodaUtils.cc.

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◆ instantiateObsLocFactory()

template<typename MODEL >

void ioda::instantiateObsLocFactory ( )

Definition at line 15 of file instantiateObsLocFactory.h.

◆ obsspace_construct_f()

const ObsSpace * ioda::obsspace_construct_f	(	const eckit::Configuration *	conf,
		const util::DateTime *	begin,
		const util::DateTime *	end
	)

Definition at line 24 of file obsspace_f.cc.

◆ obsspace_destruct_f()

void ioda::obsspace_destruct_f ( ObsSpace * obss )

Definition at line 31 of file obsspace_f.cc.

◆ obsspace_get_comm_f()

void ioda::obsspace_get_comm_f	(	const ObsSpace &	obss,
		int &	lcname,
		char *	cname
	)

Definition at line 66 of file obsspace_f.cc.

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◆ obsspace_get_datetime_f()

void ioda::obsspace_get_datetime_f	(	const ObsSpace &	obss,
		const char *	group,
		const char *	vname,
		const std::size_t &	length,
		int32_t *	date,
		int32_t *	time
	)

Definition at line 130 of file obsspace_f.cc.

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◆ obsspace_get_gnlocs_f()

std::size_t ioda::obsspace_get_gnlocs_f ( const ObsSpace & obss )

Definition at line 50 of file obsspace_f.cc.

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◆ obsspace_get_index_f()

void ioda::obsspace_get_index_f	(	const ObsSpace &	obss,
		const std::size_t &	length,
		std::size_t *	index
	)

Definition at line 80 of file obsspace_f.cc.

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◆ obsspace_get_int32_f()

void ioda::obsspace_get_int32_f	(	const ObsSpace &	obss,
		const char *	group,
		const char *	vname,
		const std::size_t &	length,
		int32_t *	vec
	)

Definition at line 94 of file obsspace_f.cc.

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◆ obsspace_get_int64_f()

void ioda::obsspace_get_int64_f	(	const ObsSpace &	obss,
		const char *	group,
		const char *	vname,
		const std::size_t &	length,
		int64_t *	vec
	)

Definition at line 104 of file obsspace_f.cc.

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◆ obsspace_get_nlocs_f()

std::size_t ioda::obsspace_get_nlocs_f ( const ObsSpace & obss )

Definition at line 54 of file obsspace_f.cc.

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◆ obsspace_get_nrecs_f()

std::size_t ioda::obsspace_get_nrecs_f ( const ObsSpace & obss )

Definition at line 58 of file obsspace_f.cc.

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◆ obsspace_get_nvars_f()

std::size_t ioda::obsspace_get_nvars_f ( const ObsSpace & obss )

Definition at line 62 of file obsspace_f.cc.

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◆ obsspace_get_real32_f()

void ioda::obsspace_get_real32_f	(	const ObsSpace &	obss,
		const char *	group,
		const char *	vname,
		const std::size_t &	length,
		float *	vec
	)

Definition at line 112 of file obsspace_f.cc.

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◆ obsspace_get_real64_f()

void ioda::obsspace_get_real64_f	(	const ObsSpace &	obss,
		const char *	group,
		const char *	vname,
		const std::size_t &	length,
		double *	vec
	)

Definition at line 120 of file obsspace_f.cc.

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◆ obsspace_get_recnum_f()

void ioda::obsspace_get_recnum_f	(	const ObsSpace &	obss,
		const std::size_t &	length,
		std::size_t *	recnum
	)

Definition at line 72 of file obsspace_f.cc.

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◆ obsspace_has_f()

bool ioda::obsspace_has_f	(	const ObsSpace &	obss,
		const char *	group,
		const char *	vname
	)

Definition at line 90 of file obsspace_f.cc.

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◆ obsspace_obsname_f()

void ioda::obsspace_obsname_f	(	const ObsSpace &	obss,
		size_t &	lcname,
		char *	cname
	)

Definition at line 37 of file obsspace_f.cc.

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◆ obsspace_obsvariables_f()

const oops::Variables * ioda::obsspace_obsvariables_f ( const ObsSpace & obss )

Definition at line 45 of file obsspace_f.cc.

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◆ obsspace_put_int32_f()

void ioda::obsspace_put_int32_f	(	ObsSpace &	obss,
		const char *	group,
		const char *	vname,
		const std::size_t &	length,
		int32_t *	vec
	)

Definition at line 157 of file obsspace_f.cc.

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◆ obsspace_put_int64_f()

void ioda::obsspace_put_int64_f	(	ObsSpace &	obss,
		const char *	group,
		const char *	vname,
		const std::size_t &	length,
		int64_t *	vec
	)

Definition at line 167 of file obsspace_f.cc.

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◆ obsspace_put_real32_f()

void ioda::obsspace_put_real32_f	(	ObsSpace &	obss,
		const char *	group,
		const char *	vname,
		const std::size_t &	length,
		float *	vec
	)

Definition at line 175 of file obsspace_f.cc.

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◆ obsspace_put_real64_f()

void ioda::obsspace_put_real64_f	(	ObsSpace &	obss,
		const char *	group,
		const char *	vname,
		const std::size_t &	length,
		double *	vec
	)

Definition at line 183 of file obsspace_f.cc.

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◆ StringVectorToCharArray()

void ioda::StringVectorToCharArray	(	const std::vector< std::string > &	StringVector,
		const std::vector< std::size_t > &	CharShape,
		char *	CharData
	)

Definition at line 67 of file IodaUtils.cc.

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◆ TypeIdName()

std::string ioda::TypeIdName ( const std::type_info & TypeId )

Definition at line 86 of file IodaUtils.cc.

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Variable Documentation

◆ IODAIO_DEFAULT_FRAME_SIZE

const std::size_t ioda::IODAIO_DEFAULT_FRAME_SIZE = 10000

Constant to be used for default maximum frame size.

Definition at line 20 of file IodaIOfactory.h.

Namespaces

Classes

Typedefs

Enumerations

Functions

Variables

Typedef Documentation

◆ ObsDataRow

Enumeration Type Documentation

◆ DistanceType

◆ ObsDtype

◆ SearchMethod

Function Documentation

◆ CharArrayToStringVector()

◆ CharShapeFromStringVector()

◆ ConvertVarType()

◆ FindMaxStringLength()

◆ instantiateObsLocFactory()

◆ obsspace_construct_f()

◆ obsspace_destruct_f()

◆ obsspace_get_comm_f()

◆ obsspace_get_datetime_f()

◆ obsspace_get_gnlocs_f()

◆ obsspace_get_index_f()

◆ obsspace_get_int32_f()

◆ obsspace_get_int64_f()

◆ obsspace_get_nlocs_f()

◆ obsspace_get_nrecs_f()

◆ obsspace_get_nvars_f()

◆ obsspace_get_real32_f()

◆ obsspace_get_real64_f()

◆ obsspace_get_recnum_f()

◆ obsspace_has_f()

◆ obsspace_obsname_f()

◆ obsspace_obsvariables_f()

◆ obsspace_put_int32_f()

◆ obsspace_put_int64_f()

◆ obsspace_put_real32_f()

◆ obsspace_put_real64_f()

◆ StringVectorToCharArray()

◆ TypeIdName()

Variable Documentation

◆ IODAIO_DEFAULT_FRAME_SIZE